Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00306 ATGCATGTTTCCACGATGTATAATCCAAGGAGAGGAGCTCAACTCATGCTCAAATTTTTGCCCACATTTACTCTAATTCTTCTGCTGCTACTTATTTCTGTCATCCTTTTCAAAAACAATGGGGATGTGGTTGAAAAATCTCCTGCGTCACACTTGCATATCCAGAAGCACATTCAAGTTGCTCATTCTGCATGTGAGGGTACACTCTACCCTGACCTTTGCGTTTCGACTGTTGCTACTTTTCCAGATCTAGCAACCAAATCACTCCCTCAAATAATCTGTTCTGTCGTCAACCAAACTGCCCTCGAGGTCAAACAAACTTCCTTCAACTGCACAGCCATTCGAAACAAGTTCAAGAAAATCCTTGGACCTCTCGAGAAGACAGCTCTCAACGACTGTCTTGAACTGTTTGCCGACACCATTGCCGAGCTGAAGAAAACCATATCGGATCTCTCGAACAACCATTCACCCGCTAAATACTACAATGACTTGCGGACCTTGTTGAGTGCGGCAATGACCAACCAAAACACTTGCCTAGATGGCTTTGCGTATAGCAAAACAAAAGTGAGAAAGAGGATTGAGAAGAACCTCGTCAAAATTTCACGTCATGTAAGTAACTCTCTTGCCATGCTCAAGAAAATCCCAGGTGTCAATGCTTCGAAACACGAAGTTTTTCCAGAGTATGGAAAAATCGATGACGATGGATTCCCATCTTGGATATCATTAAGGGATCGAAAACTGTTGCAAGCTCCTGTGGATAAGACCAAAGCTAATCTAGTGGTGGCTAAAGACGGAACTGGCAATTTCACCACGGTTGGAGATGCGGTGGCAGCAGCACCAAACGCAAGCACAACCAGGTTCGTCATCTATATAAAGGCGGGGGCTTATTTTGAAAATGTGGAGGTGGATAGGAAGAAAACCAATCTGATGTTCCTTGGAGATGGGATTGGGAAAACTATCATCAAAGCCAACAGGAATGTTGTGGACGGCTGGACAACTTTCCGATCCGCTACCGTAGCTGTAGTGGGAAATGGATTCATTGCAAAGGGCTTAACCATTGAAAACGGAGCAGGTCCTAGCAAACACCAGGCTGTGGCGTTAAGGAGTGGTTCAGATTTCTCAGCGTTTTACCAATGCAGTTTTGTTGGATACCAGGACACACTCTACACTCATACCTTGCGACAATTCTACAGGGAATGTGACATATATGGCACCATTGACTTCATTTTTGGCAATGCAGCTGTGGTTTTCCAAATGAGCAATCTATATGCTCGGCTACCATTGCAGAACCAGAAGAACATATTTACTGCACAAGGTAGAGAGGACCCTAATCAAAACACCGGCATCTCCATCTTGAATTGCAAAATTACTGCTGCATCTGATTTCATCCAGAACAAGACTTCATTTCAGACGTACTTAGGACGTCCATGGAAGGAGTATTCAAGGACTGTGTACCTCAAGAGTTTCATGGATGATTTGATAGCCCCTGCAGGATGGTTGGAATGGAATGGGACTTTTGGACTGAGTACTTTATATTATGGTGAGTATATGAATAAGGGTCCAGGGTCAAATACAAGTGCTAGAGTCAACTGGCCTGGTTATAGGGTCATCACAAATGCCACCGAGGCAAGCCAGTTTACAGTTGGGCCGTTTATACAAGGGAATGCATGGTTGAACTCAACTGGCATCCCATTCTATTCTGGTTTAGGTTAG 1713 0.4413 MHVSTMYNPRRGAQLMLKFLPTFTLILLLLLISVILFKNNGDVVEKSPASHLHIQKHIQVAHSACEGTLYPDLCVSTVATFPDLATKSLPQIICSVVNQTALEVKQTSFNCTAIRNKFKKILGPLEKTALNDCLELFADTIAELKKTISDLSNNHSPAKYYNDLRTLLSAAMTNQNTCLDGFAYSKTKVRKRIEKNLVKISRHVSNSLAMLKKIPGVNASKHEVFPEYGKIDDDGFPSWISLRDRKLLQAPVDKTKANLVVAKDGTGNFTTVGDAVAAAPNASTTRFVIYIKAGAYFENVEVDRKKTNLMFLGDGIGKTIIKANRNVVDGWTTFRSATVAVVGNGFIAKGLTIENGAGPSKHQAVALRSGSDFSAFYQCSFVGYQDTLYTHTLRQFYRECDIYGTIDFIFGNAAVVFQMSNLYARLPLQNQKNIFTAQGREDPNQNTGISILNCKITAASDFIQNKTSFQTYLGRPWKEYSRTVYLKSFMDDLIAPAGWLEWNGTFGLSTLYYGEYMNKGPGSNTSARVNWPGYRVITNATEASQFTVGPFIQGNAWLNSTGIPFYSGLG* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00306 570 Gene3D Invertase/pectin methylesterase inhibitor family protein 59 216 IPR035513 -
Pte13g00306 570 SMART PMEI_2 56 210 IPR006501 GO:0004857
Pte13g00306 570 SUPERFAMILY Pectin lyase-like 256 568 IPR011050 -
Pte13g00306 570 PANTHER PECTINESTERASE 31 559 - -
Pte13g00306 570 NCBIfam pectinesterase inhibitor domain 24 213 IPR006501 GO:0004857
Pte13g00306 570 Gene3D - 252 569 IPR012334 -
Pte13g00306 570 FunFam Pectinesterase 252 569 - -
Pte13g00306 570 Pfam Plant invertase/pectin methylesterase inhibitor 62 210 IPR006501 GO:0004857
Pte13g00306 570 FunFam Pectinesterase 57 215 - -
Pte13g00306 570 CDD PMEI-like_3 63 216 - -
Pte13g00306 570 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 62 215 IPR035513 -
Pte13g00306 570 ProSitePatterns Pectinesterase signature 2. 402 411 IPR033131 -
Pte13g00306 570 Coils Coil 134 154 - -
Pte13g00306 570 Pfam Pectinesterase 258 555 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00306 Pte-Chr13 2198004 2201897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00306 85 565 Carbohydrate Esterase AT4G02320 56.073 0.0 561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00306 K01051 - jre:108994228 815.068