Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00260 ATGGCATATGTTGGTGTTGCGCCCACTTCTGGAGTAAAAGATTCTACTGGAAGTACCCTTGGTGTTGATAGTTTGCCTGAAGAGATGAATGAAATGAAGATTGAGGATGACAAGGAAATGGAAGCAACTGTGGTGGATGGCAATGGGACTGAGACAGGACATATAATTGTCACCACTATTGGTGGTAAAAATGGCCAGTCTAAGCAGACAATAAGCTATATGGCTGAGCGTGTTGTTGGAAATGGATCCTTTGGTGTTGTATTTCGGGCGAAGTGCTTGGAGACTGGCGAGACTGTTGCTATAAAAAAGGTTCTTCAAGACAAGAGGTACAAGAACCGGGAAATGCAAACTATGCGTCTTGTTGACCACCCAAACGTTGTATCTTTGAAGCACTGTTTCTTTTCAACAACCGAGAAAGACGAGCTCTATCTCAATTTGGTACTTGAGTATGTACCTGAGACTGTACATCGCGTAATAAGACACTACAAAAAATTGAACCAGAGGATGCCATTGTTATATGTTAAACTTTATTTTTACCAGATATGTAGAGCTCTTGCGTATATTCACAATAGCATTGGTGTTTGCCACAGGGACATAAAGCCTCAAAATTTACTGGTTAATCCTCACACTCACCAGTTGAAGTTGTGTGACTTCGGAAGTGCGAAAGTCCTGGTAAAAGGGGAACCCAACATATCATACATATGTTCTAGGTACTACAGAGCACCTGAACTCATATTCGGGGCAACTGAGTACACCACTGCAATTGACATTTGGTCTGCTGGTTGTGTACTTGGTGAACTATTACTCGGCCAGCCTCTGTTCCCCGGTGAGAGTGGAGTAGACCAGCTTGTTGAAATTATTAAGGTGACATAA 873 0.4238 MAYVGVAPTSGVKDSTGSTLGVDSLPEEMNEMKIEDDKEMEATVVDGNGTETGHIIVTTIGGKNGQSKQTISYMAERVVGNGSFGVVFRAKCLETGETVAIKKVLQDKRYKNREMQTMRLVDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPETVHRVIRHYKKLNQRMPLLYVKLYFYQICRALAYIHNSIGVCHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSAGCVLGELLLGQPLFPGESGVDQLVEIIKVT* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00260 290 ProSiteProfiles Protein kinase domain profile. 73 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte13g00260 290 Pfam Protein kinase domain 73 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte13g00260 290 Gene3D Transferase(Phosphotransferase) domain 1 153 290 - -
Pte13g00260 290 CDD STKc_GSK3 68 289 IPR039192 -
Pte13g00260 290 MobiDBLite consensus disorder prediction 1 23 - -
Pte13g00260 290 Gene3D Phosphorylase Kinase; domain 1 57 152 - -
Pte13g00260 290 ProSitePatterns Protein kinases ATP-binding region signature. 79 103 IPR017441 GO:0005524
Pte13g00260 290 SUPERFAMILY Protein kinase-like (PK-like) 72 289 IPR011009 -
Pte13g00260 290 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 37 289 - -
Pte13g00260 290 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Pte13g00260 290 SMART serkin_6 73 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte13g00260 290 FunFam Mitogen-activated protein kinase 159 290 - -
Pte13g00260 290 FunFam Glycogen synthase kinase-3 beta 57 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00260 Pte-Chr13 1844488 1849620 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00260 73 283 MAP Kinase Gene Family AT2G42880 39.910 3.38e-46 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Pte13g00260 Pkinase 6.2e-56 CL0016