Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00255 ATGAGTTGCTTCAGTTGTTGTGAAGAAGATCATTTGCAAAAAGCTGCTGATACGGGTGGTCCATACACGTCTAAGAATTCTGCAGGAAATGATGAAAACTACCAGACCTCTGAAGCCGCGCCCAAGGGTTCTCAAACTGTAAAAGCCCGGCCTGTTGAAGTGCCTGCCATTCCAGCTGATGAACTGAAGGAAATAACAGACTCTTTCGGGACCAATTCACTGATTGGAGAGGGTTCATACGGAAGAGTATATCATGGAGTTCTTAAAAGTGGACAGGCTGCGGCAATTAAAAAGTTGGATTCTAGCAAACAACCGGACGAAGAATTTTTAGCCCAAGTGTCTATGGTTTCAAGGTTGAAGCATGATAATTTTGTTCAGTTGCTAGGTTATTGTGTTGATGGAAATTCTCGTGTTTTAGCTTATGAGTTTGCATCTAATGGATCTCTTCATGATATCCTACACGGGAGGAAAGGTGTTAAAGGAGCACAGCCTGGCCCTGTTCTGACTTGGGCACAGAGAGTCAAAATTTCGGTAGGGGCTGCGAAGGGGCTTGAGTATTTGCATGAGAAGGCCGATCCTCACATTATTCATCGAGATATCAAGTCAAGCAATGTACTGATTTTTGATGATGATGTCGCAAAGATTGCAGACTTTGATCTGTCAAATCAGGCACCTGATATGGCTGCTCGTCTTCACTCAACCCGTGTTCTTGGAACCTTCGGTTATCATGCTCCTGAATATGCAATGACTGGACAACTGAATGCTAAGAGCGACGTATACAGCTTCGGTGTGGTCCTCTTGGAATTACTGACGGGAAGAAAGCCTGTCGATCATACACTTCCACGTGGACAACAGAGTCTAGTTACGTGGGCTACTCCAAAACTTAGTGAAGATAAAGTCAGACAGTGCATTGATGCAAGATTAAACGGAGATTACCCACCAAAAGCTGTTGCAAAGGTACCAGTTGTCTTGTTTACTACGTGTTTTAACAACAACAGTATAGAGGAAATTAAAAGAGACAAAAGCAATAGCAACATGAGATCTGTTAACGCTGTCGGCCGATGGTGCCTGCATCTAGCTCCTTTCTATTATTTTCTCAGTGAATTAGTGTTTCAGTGTTACTAG 1125 0.4329 MSCFSCCEEDHLQKAADTGGPYTSKNSAGNDENYQTSEAAPKGSQTVKARPVEVPAIPADELKEITDSFGTNSLIGEGSYGRVYHGVLKSGQAAAIKKLDSSKQPDEEFLAQVSMVSRLKHDNFVQLLGYCVDGNSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLTWAQRVKISVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKVRQCIDARLNGDYPPKAVAKVPVVLFTTCFNNNSIEEIKRDKSNSNMRSVNAVGRWCLHLAPFYYFLSELVFQCY* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00255 374 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 4 326 - -
Pte13g00255 374 Pfam Protein tyrosine and serine/threonine kinase 73 320 IPR001245 GO:0004672|GO:0006468
Pte13g00255 374 Gene3D Phosphorylase Kinase; domain 1 29 143 - -
Pte13g00255 374 SUPERFAMILY Protein kinase-like (PK-like) 49 320 IPR011009 -
Pte13g00255 374 ProSiteProfiles Protein kinase domain profile. 69 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte13g00255 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Pte13g00255 374 SMART serkin_6 69 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte13g00255 374 Gene3D Transferase(Phosphotransferase) domain 1 144 361 - -
Pte13g00255 374 MobiDBLite consensus disorder prediction 19 43 - -
Pte13g00255 374 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Pte13g00255 374 FunFam PTI1-like tyrosine-protein kinase 3 33 143 - -
Pte13g00255 374 FunFam pto-interacting protein 1 145 339 - -
Pte13g00255 374 MobiDBLite consensus disorder prediction 15 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00255 Pte-Chr13 1825944 1830191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00255 60 320 Receptor kinase-like Gene Family AT4G02010 51.321 3.41e-82 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Pte13g00255 PK_Tyr_Ser-Thr 7.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00255 K13436 - cave:132172786 593.578