Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00254 ATGGGGTCCTCCGATATGGGGGTTATGGGGAAGAGGTCTACTGAGTGGAATATAAATGATTGGAGATGGGATGGTGATCTTTTTCTTGCTAGAAGGATGAATCCAGGGGTTTCTGATAGCGCAAGCCGTCAATTTATTCCAGAGTCTGGGATTCCTGAGCGTAGGGGCTCCTCTAACACCTCGTCATCATGCTCTGAAGAAGTCAACCATGAAATCGAGAAAGGGAGGATAGAACAGGAAAAGAAAAGGAGAGTCGTTGTGGTTGAAGATGACAGCTCAACTGATGAAGGAGGTTCTCTTTCTTTAAAACTTGCCGCCCACGGTTATCCAATTTCTGATGGGGAGGTAGTCAATTGGGATAGGACAGGTGCAAAGAAAGCCAAATTTGTAACCAGTACTTCAAATCGAGCGCTTTGTCAGGTCGAAAACTGTGGTGCGGATCTGACCAGAGCCAAGGAATATCATCGCCGGCATAAAGTTTGTGAGATTCACTCCAAGGCCAGTGGGGCACTTGTGGGCAATGTTATGCAACGCTTCTGTCAACAGTGTAGTAGGTTTCATGTGCTTCAAGAGTTCGATGAAGGCAAACGAAGCTGCCGCAGGCGTTTGGCTGGCCACAATAAGCGAAGAAGGAAAATGAATCAGGATGATGTTCCAAATGGAAGTTCACCAAACAGTCAGACTAATAATTACCTTTTAATTAAATTCTTAAGTATGCTCTCCAATGTGCATTCTAATATATCAGATCAGAAAAGTGATGAAGATTTATCCCATCTTCTAAGGAGTCTTGGCAGTGGAAATGGCGAGCAAGGGGATAAAAATATACCAATCCTTGTGCGGGAACCTGAACATTTGCCGAAAAATGGGACAGCTGAGAAATCAAATGTGGCTTCCACTTTGATCTCAAAGGCTCCAGACGTCACTGAAATGGTTCTCAAACAGCAACAAAATCTATCTATGTCTGCATTACAGCAACAAGCAATGAAAAGAAATGATGCTAGAGGTTCTGAGATAGACACCCCGCCTCTTATAAAAAATAGTTTCCGGAAAAGTCAATCAGCCTGCTCCCAAGTCAGAGACAGCAATACTGGGCAAACAAAAATTAAAAGCTTTGATTTAAATGACATATATGTTGACTCCGATGATGGTGAAGATCTAGAGAGGTCAATAGTTCCTGCTACTGCAGGAAATAGCTCTGTGGAGTACTCCCATCATTCAAGCCCACCTCAAATGAGTGGTAATTCAGATTCAGTATCTGCACATTCTCCTGCTAGTTCCAGTGGAGAGACTCAGAGCCGCACTGATCGAATTGTATTTAAACTCTTCGGTAAAGAACCAAATGACTTTCCTCTTGTTTTGCGAGCACAGATTCTTGACTGGTTATCTCACAGTCCAACTGACATTGAGAGCTTTATACGCCCTGGTTGTATTCTTTTGACAATCTACCTTCGGCAGGCTGAGTCCATGTGGGATGAAATAAGTCGCGACCTGAGTTCCAGTTTGAATAGGCTTCTTGATGTATCAGAGGACATTTTCTGGCGAACTGGGTGGATCTACTTGCAGGTCCAGGACCAGATAGCCTTTATTTTGGATGGTCGTGCTGTCATCAACACTTCTTTACCTTTCCATGGCAATAGCTGTAAAATCTCATACCTGCAACCAATAGCAGTTCCTTCATCAGAAAGAGCACATTTTTCAGTCAAGGGAATGAACTTGATTTACCCCACTGTTAAGCTACGTTGTGCGCTTGGAGGGAGATATCTTCTTCATGAAGTGACTTACGAGTCCGTGGATGGTAGAGTATGCTCAAAAGATCTTGACGAGGTCCAGTGCATCAACTTTTCGTGTTCTATTCCTGAAGTTAGAGGGAGGGGATTTATTGAGATCGAAGACGAGGATCTCAGCAGCAGCTTTTTTCCTTTCATAGTTGCAGAGGAGGATGTTTGCTCAGAAATCCGAGTGCTGGAGACTTTATTAGAATGTAATGACACCAACAGTGATTCTCGAGGGATTGAGAAACTGGAAGCGAAAAACCAAGCCATGAACTTCATTCACGAAATGGGTTGGCTATTACACAGAAGCCAAATGAAATCTAGACTCGCAAACACAGAATTGCATACTGATTTCTTCCCTCTAAAACGGTTCGTATGGCTCATGGAATTCTCCGTGGACCATGGTTGGTGTGCAGTTGTGAAAAGGCTTCTGACCATCATGCTCGAAGGAACTGTGGGAACAGGGGATCACTCGTCCCTCTATGGGGCATTATCAGAAATGGGTATCCTCCACAGAGCTGTAAGGAAAAACAGTAGGCTATTGGTGGAACTGCTTTTGAAATTTTTCCCCGAAAATATTTCAAACATTCTAGGATCTGAACATAAGGCACTGCTTGATGAAAAGACAAGATTTCTGTTTAGACCCGATGCTGTTGGCCCCGCAGGTCTGACACCTCTTCACGTTGCTGCTGGGAAAGATGACTCTGAAGATGTACTGGATGCATTGACTGATGATCCTGACAAGGTGGGTATACAAGCATGGAAAAGTGCCTGTGATTCCTCTGGATCCACTCCGGAAGACTACGCTAGGTTGCGTGGCAATTTCTCCTATATTCATCTGGTCCAGAAGAAAATGAAAGAGAGACAGGAAGCTGCACATACGGTGGTTGACATTCCCAATGGTGTCGTCGGAAGCAGTTCCAGGCACAAGGAAATCGAGTTGGCCAAGAGCTTTGAGATTGCAAGGAATCAAATTAGATATGGTAAAGGGCCGTGTAAGCTGTGTGTTCATAAGTTGGCTCATAAAACAGTTGGGAAGTCTTTGGTCTACAGACCTGCTATGCTTTCATTGTTGGCCGTTGCAGCTGTATGTGTTTGCGTTGCGCTTCTGTTGAAAAGCGCGCCTCGAGTCGTTTCCTCATTTGAGCCGTTTAGGTGGGAAAAGTTGGACTTTGGTACAAGCTAA 2958 0.4425 MGSSDMGVMGKRSTEWNINDWRWDGDLFLARRMNPGVSDSASRQFIPESGIPERRGSSNTSSSCSEEVNHEIEKGRIEQEKKRRVVVVEDDSSTDEGGSLSLKLAAHGYPISDGEVVNWDRTGAKKAKFVTSTSNRALCQVENCGADLTRAKEYHRRHKVCEIHSKASGALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKMNQDDVPNGSSPNSQTNNYLLIKFLSMLSNVHSNISDQKSDEDLSHLLRSLGSGNGEQGDKNIPILVREPEHLPKNGTAEKSNVASTLISKAPDVTEMVLKQQQNLSMSALQQQAMKRNDARGSEIDTPPLIKNSFRKSQSACSQVRDSNTGQTKIKSFDLNDIYVDSDDGEDLERSIVPATAGNSSVEYSHHSSPPQMSGNSDSVSAHSPASSSGETQSRTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPTDIESFIRPGCILLTIYLRQAESMWDEISRDLSSSLNRLLDVSEDIFWRTGWIYLQVQDQIAFILDGRAVINTSLPFHGNSCKISYLQPIAVPSSERAHFSVKGMNLIYPTVKLRCALGGRYLLHEVTYESVDGRVCSKDLDEVQCINFSCSIPEVRGRGFIEIEDEDLSSSFFPFIVAEEDVCSEIRVLETLLECNDTNSDSRGIEKLEAKNQAMNFIHEMGWLLHRSQMKSRLANTELHTDFFPLKRFVWLMEFSVDHGWCAVVKRLLTIMLEGTVGTGDHSSLYGALSEMGILHRAVRKNSRLLVELLLKFFPENISNILGSEHKALLDEKTRFLFRPDAVGPAGLTPLHVAAGKDDSEDVLDALTDDPDKVGIQAWKSACDSSGSTPEDYARLRGNFSYIHLVQKKMKERQEAAHTVVDIPNGVVGSSSRHKEIELAKSFEIARNQIRYGKGPCKLCVHKLAHKTVGKSLVYRPAMLSLLAVAAVCVCVALLLKSAPRVVSSFEPFRWEKLDFGTS* 986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00254 985 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 58 871 IPR044817 GO:0003677
Pte13g00254 985 MobiDBLite consensus disorder prediction 394 431 - -
Pte13g00254 985 Pfam SBP domain 139 212 IPR004333 GO:0003677
Pte13g00254 985 MobiDBLite consensus disorder prediction 202 226 - -
Pte13g00254 985 FunFam Squamosa promoter-binding-like protein 14 130 200 - -
Pte13g00254 985 MobiDBLite consensus disorder prediction 323 363 - -
Pte13g00254 985 Gene3D - 721 892 IPR036770 -
Pte13g00254 985 ProSiteProfiles Zinc finger SBP-type profile. 136 213 IPR004333 GO:0003677
Pte13g00254 985 SUPERFAMILY Ankyrin repeat 759 872 IPR036770 -
Pte13g00254 985 Gene3D - 130 200 IPR036893 GO:0003677|GO:0005634
Pte13g00254 985 MobiDBLite consensus disorder prediction 37 76 - -
Pte13g00254 985 MobiDBLite consensus disorder prediction 345 363 - -
Pte13g00254 985 SUPERFAMILY SBT domain 137 217 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00254 Pte-Chr13 1809458 1816130 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00254 3 986 SBP-box Gene Family AT3G60030 50.792 0.0 853
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pte13g00254 SBP 1.3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00254 - - gmx:100814273 1182.16