Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00246 ATGAGCAGACCTTCCAAGTCTTCCTCATCTTCTGCGAGTAGCAGGAGTTACAATGTTACAAGTGCTTCATCTTTGTCACAAAAGCAGGTAGACCTTAGTACAGATCTCAGGCTCGGCCTAAGCATTTCAGCCTCCCAGCAGATCAATGACACTTATTTTTCTGGATTAAGCGGGCAAGGGTATCCACCAGAATTTGATTGGCCTGTAAGCGAGTCATCACTATCAAGGAGATCATCTCTTGTAGCTGAAGGAAACGATTCCAGTGTCGAACATGCCAGCTTCTTCGTCAAGGTTTACATGGAAGGCATTCCTATTGGCAGAAAACTGAATCTGTTAGCCCATGACGGCTACCATGATTTGATACAGACTCTTGATCACATGTTCGACACAAACATTCTCTGGGGAGATGATATGGACACATTGCAGCCAGAGAAATGTCATGTATTAACATACGAGGATGAGGAAGGGGATCTCATGATGGTTGGGGATGTTCCTTGGGCGATGTTCTTGTCTACTGTGAAAAGATTGAAGATCACAAGGGTAGACACATGTGGATGTTAA 561 0.4439 MSRPSKSSSSSASSRSYNVTSASSLSQKQVDLSTDLRLGLSISASQQINDTYFSGLSGQGYPPEFDWPVSESSLSRRSSLVAEGNDSSVEHASFFVKVYMEGIPIGRKLNLLAHDGYHDLIQTLDHMFDTNILWGDDMDTLQPEKCHVLTYEDEEGDLMMVGDVPWAMFLSTVKRLKITRVDTCGC* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00246 186 MobiDBLite consensus disorder prediction 1 26 - -
Pte13g00246 186 SUPERFAMILY CAD & PB1 domains 85 178 - -
Pte13g00246 186 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 31 182 IPR003311 GO:0005634|GO:0006355
Pte13g00246 186 Gene3D - 87 185 - -
Pte13g00246 186 ProSiteProfiles PB1 domain profile. 93 183 IPR000270 GO:0005515
Pte13g00246 186 Pfam AUX/IAA family 83 180 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00246 Pte-Chr13 1756393 1757762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00246 97 178 B3 DNA Binding Superfamily AT4G23980 37.805 3.91e-13 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pte13g00246 AUX_IAA 7.9e-29 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00246 K14484 - qsa:O6P43_010935 213.386