Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00242 ATGGGAAGGCACTCATGCTGCCATAAACCGAAATTAAGGAAAGGCCTCTGGTCACCTGAAGAAGATGAAAAGCTCTTGAGACATATCAACAAGTATGGCCATGGTTGTTGGAGCTCTATCCCAAAACAAGCCGGTTTGCAGAGATGTGGAAAGAGCTGCAGATTAAGGTGGATCAACTACTTGAGGCCTGATTTGAAGAGAGGCACAATCTCACAAGGGGAAGAGAATATTATCATTGAACTTCATGCAGTCCTCGGGAATAGGTGGTCCCAAATTGCAGCACAATTGCCAGGGAGAACTGACAATGAAATAAAAAACTTATGGAATTCTAGCTTAAAGAAGAAGCTCAGGCAAAGAGGAATCGACCCTGTCACTCACAAGCCCATTTCTGAGGTTCAAAATCGACAAGACAAAGATGCAGCAGCTATGAGACAAGAGAAAGTATCGAATGAACTAAAGCTCCACAAGCAAGACAATTGTCCATCAGATTTAATCACGCATGGGGTGAGATCATCTTCACTTGCTACACAAGCCTACCCATTTGTGAGTGAAGGTTATTCTTCCAGCTCCAAACCGATAATTAACAGCAGAAGTAATACTGATTTGCTGTCTCGTTCTTCCAGCAAGGAATACTTACGGAAGTTCTTTACGTCCCATTCCAATCAAGAAAGCTCCAGCGCAACTTGCCAGCCTTTAGCTTTGGTAGGAAATCTTCCCCTTCACTTGAAATATGCATCGTCCTCATCCCTCACAACAAACACTAACCTTTCGTGCTGGTTTGACCGAACTGCAAAAACATACAGCACGTATTCTGAATTTAGTTCCAATACATTGTCTACAGCTGTTCCTTGCGAAACCAATTCATTTCCTTCTAATTATATTTCCTACCAGCCTTTCATGACATACCCCTCAGAAGACATTCCAATATCCTCTTGCTCTCTGAATGGACCTGATTGTTTTTTGGGGGGATCCATTATCTCGAACAATTACAGCAACAACACAAACAGAAGCAACAGTAACAGCAACACAGAGTTGCAAGGCCACAGTCCCTTCTTTGAGAACATCATGAGTACTTGGGGATTGACAGAACCTAGCTTGTCTGAAGAAGAAGTAGCTCAGATTGGTGTCATGGGAAACCAACCAGAAAGTGTCAGTTGGGTTGAATCACTTCAGAATCCTATGATTCTAGGTGCCATAAAAGCTCAAACTCCACTGACCTTGTGTAACATGATAAAGCCAGACGGTCATTTGGTATCTGATACTTTGGGAGCTATATTTCTGCAAAAGCGGCAAGAAGAATCTTCAATGCCTTATTTTCTTGGCTCCTAG 1329 0.4266 MGRHSCCHKPKLRKGLWSPEEDEKLLRHINKYGHGCWSSIPKQAGLQRCGKSCRLRWINYLRPDLKRGTISQGEENIIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSSLKKKLRQRGIDPVTHKPISEVQNRQDKDAAAMRQEKVSNELKLHKQDNCPSDLITHGVRSSSLATQAYPFVSEGYSSSSKPIINSRSNTDLLSRSSSKEYLRKFFTSHSNQESSSATCQPLALVGNLPLHLKYASSSSLTTNTNLSCWFDRTAKTYSTYSEFSSNTLSTAVPCETNSFPSNYISYQPFMTYPSEDIPISSCSLNGPDCFLGGSIISNNYSNNTNRSNSNSNTELQGHSPFFENIMSTWGLTEPSLSEEEVAQIGVMGNQPESVSWVESLQNPMILGAIKAQTPLTLCNMIKPDGHLVSDTLGAIFLQKRQEESSMPYFLGS* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00242 442 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pte13g00242 442 PANTHER MYB DOMAIN PROTEIN 55 1 344 - -
Pte13g00242 442 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pte13g00242 442 Pfam Myb-like DNA-binding domain 68 110 IPR001005 -
Pte13g00242 442 Gene3D - 11 67 - -
Pte13g00242 442 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Pte13g00242 442 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pte13g00242 442 Gene3D - 70 148 - -
Pte13g00242 442 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pte13g00242 442 SMART sant 13 63 IPR001005 -
Pte13g00242 442 SMART sant 66 114 IPR001005 -
Pte13g00242 442 CDD SANT 17 61 IPR001005 -
Pte13g00242 442 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Pte13g00242 442 FunFam Myb transcription factor 11 67 - -
Pte13g00242 442 FunFam MYB transcription factor 68 129 - -
Pte13g00242 442 CDD SANT 74 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00242 Pte-Chr13 1721288 1723142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00242 1 137 MYB Transcription Factor Family AT4G01680 86.131 2.63e-85 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte13g00242 Myb_DNA-binding 2.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00242 K09422 - qsa:O6P43_007336 449.129