Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00234 ATGGAGCTACCTTCAGCAGCAAAGCAATTCTTTAATATTGTCACAAGCAAAGGCAGAAAGAGTGAAAGAATGGGGGACTTATACATATTATCTAGCTTGATATTGTGTTTGGCAACTTTCACAAAATTCTTTGTCGAGGGAGCAGGATGGCAGCAAGCCCATGCAACATTCTATGGTGGTAGTGATGCTTCAGGAACAATGGGAGGGGCATGTGGTTACGGAAATCTCTACACTGACGGCTATGGTGTAAAAACGGCTGCCCTAAGCACAGCTTTGTTCAATGATGGCAAGGCATGCGGTGGTTGCTATCAGATTGTTTGTGATGGCAACAAAGTGCCTCAGTGGTGTCTAAGGGGAACTTACATCACTATTACTGCTACAAATTTTTGTCCACCAAACTACGCTCTCCCTAATGATAATGGTGGTTGGTGTAATCCTCCACGACCCCATTTTGACATGTCACAGCCAGCATTCCTGACCATTGCCAAGTACAAGGCTGGAATTGTGCCAATTCTATACAGAAAGGTAGGATGCAGAAGAACTGGAGGCATTAGATTTACCATTAATGGAAGAGATTACTTTGAACTAATACTTATCAGCAACGTAGGCGGAGCTGGGGACATCTCTATGGTATGGATCAGGGGGTCCAGAATGAACACATGGCAATCCATGTCAAGGAATTGGGGTTCTAACTGGCAAAGCTTGAGATATCTTAATGGTCAGAGTCTGTCCTTCAGGATTCAACTCAGTAATGGAAAGACCCGTACAGCTTACAATGCCATCCCCTCCAATTGGAGATTTGGTCAGTCATTCACCAGCAATGTTCAATTTTGA 834 0.44 MELPSAAKQFFNIVTSKGRKSERMGDLYILSSLILCLATFTKFFVEGAGWQQAHATFYGGSDASGTMGGACGYGNLYTDGYGVKTAALSTALFNDGKACGGCYQIVCDGNKVPQWCLRGTYITITATNFCPPNYALPNDNGGWCNPPRPHFDMSQPAFLTIAKYKAGIVPILYRKVGCRRTGGIRFTINGRDYFELILISNVGGAGDISMVWIRGSRMNTWQSMSRNWGSNWQSLRYLNGQSLSFRIQLSNGKTRTAYNAIPSNWRFGQSFTSNVQF* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00234 277 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 68 183 IPR007112 -
Pte13g00234 277 SUPERFAMILY Barwin-like endoglucanases 49 201 IPR036908 -
Pte13g00234 277 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 193 273 IPR007117 -
Pte13g00234 277 Gene3D - 183 277 IPR036749 -
Pte13g00234 277 FunFam Expansin 39 179 - -
Pte13g00234 277 Gene3D - 38 179 IPR036908 -
Pte13g00234 277 SMART dpbb_1 85 173 IPR007112 -
Pte13g00234 277 PANTHER EXPANSIN-A15 36 274 IPR002963 GO:0009664
Pte13g00234 277 FunFam Expansin 183 277 - -
Pte13g00234 277 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Pte13g00234 277 PRINTS Expansin/Lol pI family signature 89 107 IPR007118 GO:0005576
Pte13g00234 277 PRINTS Expansin/Lol pI family signature 221 235 IPR007118 GO:0005576
Pte13g00234 277 PRINTS Expansin/Lol pI family signature 49 64 IPR007118 GO:0005576
Pte13g00234 277 PRINTS Expansin/Lol pI family signature 166 182 IPR007118 GO:0005576
Pte13g00234 277 PRINTS Expansin/Lol pI family signature 259 273 IPR007118 GO:0005576
Pte13g00234 277 Pfam Lytic transglycolase 85 173 IPR009009 -
Pte13g00234 277 Pfam Expansin C-terminal domain 184 262 IPR007117 -
Pte13g00234 277 SUPERFAMILY PHL pollen allergen 180 273 IPR036749 -
Pte13g00234 277 CDD DPBB_EXPA_N 49 178 - -
Pte13g00234 277 PRINTS Expansin signature 80 94 IPR002963 GO:0009664
Pte13g00234 277 PRINTS Expansin signature 141 158 IPR002963 GO:0009664
Pte13g00234 277 PRINTS Expansin signature 230 251 IPR002963 GO:0009664
Pte13g00234 277 PRINTS Expansin signature 122 132 IPR002963 GO:0009664
Pte13g00234 277 PRINTS Expansin signature 194 215 IPR002963 GO:0009664
Pte13g00234 277 PRINTS Expansin signature 182 194 IPR002963 GO:0009664
Pte13g00234 277 PRINTS Expansin signature 259 275 IPR002963 GO:0009664
Pte13g00234 277 PRINTS Expansin signature 109 120 IPR002963 GO:0009664
Pte13g00234 277 PRINTS Expansin signature 158 171 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00234 Pte-Chr13 1696667 1697881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00234 29 278 Expansin Gene Family AT4G01630 75.200 4.58e-146 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00234 - - gmx:100787396 456.062