Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00228 ATGATGAAGAAACAAGTATGCAAAGGTACATATCATCGAGTCACACATAGTATATATCTTAATTTTTCAACTTCATTTTTTTTTCCTGTTTGCAGGCGGGGTCGCCTACCAAGAGTACTCGTTCTTGCACCTACCCGTGAGTTAGCAAAGCAAGTAGAGAAAGAGATTAAAGATTCTGCTCCCTATTTAAGCACAGTCTGTGTCTATGGTGGAGTTTCTTATGTGACACAACAAAATGCACTCTCCAGAGGAGTTGATGTCGTGGTTGGAACTCCTGGTAGAATAATTGATCTCATAAACGGGAAAAGCCTCAGACTGAATGAAGTTCAATATTTAGTCCTTGATGAAGCTGATCAGATGCTCGCGGTTGGTTTTGAGGAGGATGTGGAACTAATTCTAGAGCAGCTTCCATCTGAGCGGCAGAGCATGCTTTTCTCAGCAACCATGCCGGGTTGGGTAAAGAAACTGGCACGGAAGTACTTGGACAATCCATTGAGTATTGATTTGGTTGGTGACCGAGATGAAAAGCTTGCTGAAGGGATAAAACTTTATGCTATATCAGCTACTGCAACTTCAAAGCGGACCATTCTTAGTGACCTCATCACGGTTTATGCAAAAGGCGGAAAGACTATTGTTTTTACTCAGACGAAGAGAGATGCCGATGAAGTGTCACTGGCATTGTCAAATAGTATCACTTCTGAAGCATTGCATGGGGATATATCTCAACACCAGAGAGAGAGAACATTGAATGGTTTTCGGCAAGGGAAGTTCACTGTACTTGTGGCAACAGACGTTGCAGCTCGGGGACTTGATATTCCTAATGTTGATTTGATTATCCACTATGAGCTTCCCAATGATGCAGAAACATTTGTACATCGCTCTGGCCGTACTGGCCGTGCTGGGAAACAGGGTACTGCTCTTGTTATGTACACCAGCAGCCAGATGAGAACAGTAAGGTCTCTTGAACGTGATGTGGGTTGCAAGTTTGAGTTCATTAATCCACCAGCTATGGAAGAGGTTTTGGTTTCATCTGCGGAGCACGTTGTTGCTACACTAAAAGGAGTTCACCCTGAATCTATAGAGTTTTTTACTCCAACTGCTCAAAAATTGATTCAAGATCAAGGATCAGCTGCACTTGCTGCTGCATTAGCTCATTTGAGTGGATTCTCTTGCCCACCTTCTTCGCGATCTCTTATAAACCATGAGCAGGGATGGGTAACGTTGCAACTGACTCGAGATTCAGCCTACTCAAGAGGGTTTTTTTCTGCTAGAGCTGTGACTGGGTTGCTCTCTAGTCTTTATCCTCCCGCTGCTGATGAAGTTGCAAAGATACATTTAATTGCTGACGAAAGAGTTCAGGGAGCAGTTTTTGATCTTCCAGAGGACATAGCCAAAGAGTTGTTGGCTAAGCAAATAGAACCTGGGTACACTATTTCGAAGATTCAAAAGTTACCTCTTCTGCAAGATGATGGGCCTCGGAGTGATTACTATGGCAAGTTTTCTGGCAGAGATCGGAATAGCCGAATAGGCTCTAGGGACAGGAAAAGGTTCAGTACATCACGAGGTTGGGATGGTGATGATTCAGATGATGACTTCAATAATTCGTATGGGAGAAGAGGAGGCCAAAGTTTTAGAGGCGCTAGAAACACTGGTGGCCGGGCAAGAGGTGGTGGCAACAATTGGCTGATAGGAGATAGGAGGTCAAATAGGCCATCTTCACGAGACAGAAGCTTTGGAGGTTCCTGTTTTGTGTGTGGTGAATCTGGGCACCGAGCTGCAGAATGCCCGCAAAAGTAA 1797 0.443 MMKKQVCKGTYHRVTHSIYLNFSTSFFFPVCRRGRLPRVLVLAPTRELAKQVEKEIKDSAPYLSTVCVYGGVSYVTQQNALSRGVDVVVGTPGRIIDLINGKSLRLNEVQYLVLDEADQMLAVGFEEDVELILEQLPSERQSMLFSATMPGWVKKLARKYLDNPLSIDLVGDRDEKLAEGIKLYAISATATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSNSITSEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDAETFVHRSGRTGRAGKQGTALVMYTSSQMRTVRSLERDVGCKFEFINPPAMEEVLVSSAEHVVATLKGVHPESIEFFTPTAQKLIQDQGSAALAAALAHLSGFSCPPSSRSLINHEQGWVTLQLTRDSAYSRGFFSARAVTGLLSSLYPPAADEVAKIHLIADERVQGAVFDLPEDIAKELLAKQIEPGYTISKIQKLPLLQDDGPRSDYYGKFSGRDRNSRIGSRDRKRFSTSRGWDGDDSDDDFNNSYGRRGGQSFRGARNTGGRARGGGNNWLIGDRRSNRPSSRDRSFGGSCFVCGESGHRAAECPQK* 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00228 598 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 25 508 - -
Pte13g00228 598 Pfam Zinc knuckle 581 597 IPR001878 GO:0003676|GO:0008270
Pte13g00228 598 ProSiteProfiles Zinc finger CCHC-type profile. 582 597 IPR001878 GO:0003676|GO:0008270
Pte13g00228 598 Gene3D - 184 377 IPR027417 -
Pte13g00228 598 FunFam Nucleolar RNA helicase II 189 379 - -
Pte13g00228 598 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 196 348 IPR001650 -
Pte13g00228 598 Pfam DEAD/DEAH box helicase 33 156 IPR011545 GO:0003676|GO:0005524
Pte13g00228 598 CDD DEADc 32 168 - -
Pte13g00228 598 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 167 IPR014001 -
Pte13g00228 598 CDD SF2_C_DEAD 181 310 - -
Pte13g00228 598 Pfam GUCT (NUC152) domain 388 488 IPR012562 GO:0003723|GO:0004386|GO:0005524
Pte13g00228 598 Pfam Helicase conserved C-terminal domain 193 301 IPR001650 -
Pte13g00228 598 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 322 IPR027417 -
Pte13g00228 598 SMART c2hcfinal6 581 597 IPR001878 GO:0003676|GO:0008270
Pte13g00228 598 SMART helicmild6 221 301 IPR001650 -
Pte13g00228 598 MobiDBLite consensus disorder prediction 495 598 - -
Pte13g00228 598 SUPERFAMILY Retrovirus zinc finger-like domains 570 597 IPR036875 GO:0003676|GO:0008270
Pte13g00228 598 Gene3D - 565 598 - -
Pte13g00228 598 MobiDBLite consensus disorder prediction 496 534 - -
Pte13g00228 598 CDD GUCT_Hera 395 475 - -
Pte13g00228 598 SMART ultradead3 10 184 IPR014001 -
Pte13g00228 598 Gene3D - 20 171 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00228 Pte-Chr13 1644738 1649578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00228 38 323 Eukaryotic Initiation Factors Gene Family AT1G72730 39.863 4.37e-59 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00228 - - vvi:100251060 894.419