Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00223 ATGTCTTCCTCAAGGCCAAGTCAGTCATCCAGCAATTCAGGTCGGTCAAGATCTAGTGCTAGGGTAATTGCTCAGACAACTGTTGATGCAAAGATCCATGCAGATTTTGAGGAGTCAGGAAGTTCCTTTGACTACTCTAGCTCTGTGCGGGTGACTAGTGGGACTGCTGGAGGTCAACCACCTCGTTCGGATGGAGTGACTACAGCTTACCTGCATCAGATTCAAAAAGGCAAGCTGATACAGCCATTCGGATGTTTGCTAGCCCTGGATGATAAAACATTGAAGGTGATTGCTTACAGCGAGAATGCACCTGAAAAGCTCACCGTAGTTAGTCAAGCGGTTCCAAGTGTTGGAGATCACCCAGTGCTCGGAATTGGAAGTGATATAAGGTCTATCTTCACTGCTCCAAGTGCTGCTGCCTTGCATAAGGCACTAGGTTTTGGGGATGTTTCTCTTCTTAACCCTATCTTAGTTCATTGTAAAACGTCTGGGAAGCCCTTTTATGCAATCGTCCATCGAGTTACAGGAAGCTTGGTCATTGACTTTGAACCAGTGAAGCTTTATGAAGTTCCCATGACTGCAGCAGGAGCTCTCCAATCTTACAAATTAGCTGCCAAGGCAATTACCAGGTTACAATCTTTGCCCAGTGGGAGCTTGGAAAGGCTATGTGATACAATGGTCCAAGAGGTTTTTGAACTCACAGGTTATGACAGGGTGATGGCATATAAATTTCATGATGACGATCACGGGGAAGTTATTGCTGAGATTACAAAGCCAGGCTTGGAGCCGTATCTGGGTTTGCATTACCCTGCCACCGATATCCCTCAAGCTGCTCGTTTTTTATTTATGAAGAATAGAGTGCGCATGATCGTGGATTGCCGTGCAAAGCTAGTGAAAGTGCTTCAAGATCTGAAGCTTCAGCTTGATCTGACTCTTTGTGGATCAACCTTGAGAGCACCTCATAGCTGCCACTTACAGTACATGGAGAACATGAATTCTATAGCTTCCCTGGTCATGGCAGTTGTAGTCAATGAAGGAGATGAAGGGAGCGAGGGTTCTGATTCTGTTCAGTCTCAAAAGAGGAAGAGACTTTGGGGTTTGGTTGTGTGTCACAACACAACTCCAAGGTTTGTTCCATTCCCTCTTAGATATGCTTGTGAATTTTTAGCACAAGTGTTTGCGATTCATGTGAATAAGGAATTGGAGTTAGAAGATCAGATTTTTGAGAAGAATATCTTGCGCACTCAAACCCTATTATGTGATATGATAATGCGCGATGCTCCCCTTGGTATTGTATCACAAAGCCCTAACATAATGGATCTTGTAAAATGTGATGGAGCTGCCCTTTTATACAAGAACCAGATATGGAGACTGGGAATGACACCATCTGATACCCAGCTTCACGAGATAGCATTGTGGCTGTCTGAGCATCATATGGACTCCACTGGTTTGAGCACAGATAGTTTAAATGATGCAGGTTTCCCTGGGGCGCTCTCACTAGGTGACAAAGTATGTGGAATGGCAGCTGTTAGGATTAGTTCGAAAGATTTGATTTTCTGGTTTAGGTCCCATACTGCTGCAGAAATTCGGTGGGGAGGTGCAAAACATAAACCTGGTGAGGAGGATGATGGGAAAAGGATGCATCCAAGATCATCTTTCAAGGCTTTTCTTGAAGTTGTGAGAAGGAGGAGTATACCATGGAAAGACTATGAAATGGATGCAATCCATTCATTGCAGCTAATACTTAGAAATGCGTTCAAAGATACAGAGACTCTGGAGATAAATGCCAAAGCAATTAACACAGGGCTCAGTGATCTGAAAATTGAAGGGATGCAAGAACTTGAAGCGGTGACTAGTGAGATGGTCCGCTTGATTGAAACAGCCACAGTACCCATTTTGGCAGTTGACATCGATGGATTGGTTAATGGGTGGAATACAAAAATCGCTGAGTTGACTGGTCTTCCAGTCGAGAAGGCAATCGGAAAGCATTTGCTCACTCTTGTAGATGATACTTCCACAGATACAGTGCAGAACTTGTTACACCTTGCATTGCAAGGCAAAGAAGAGCAGAACGTCCAATTTGAGATCAATACCTATGGGTCCAGGGTTGATTCAGGTCCTATCAGCTTAGTAGTGAATGCCTGTGCAAGTAGAGACCTTCAAGACAATGTCGTGGGGGTTTGTTTTGTGGCTCAGGATATCACTAGCCAGAAGATAGTCATGGATAAATTCACTCGAATTGAAGGTGATTACAAGGCTATTGTACAAAATCCGAACCCTTTGATACCCCCAATATTCGGTTCAGATCAATTCGGCTGGTGTTCTGAGTGGAATCTAGCAATGACAAAATTGACTGGCTGGAAGCGCGAAGAGGTCATTGATAAAATGCTTCTAGGGGAAGTTTTCGGTATCCACAAGGCTTGCTGTCGTCTCAAGAACCAAGAAGCTTTTGTCAATCTTGGCATTGTGCTTAATAAAGCCGTGGCTGGTGAAGAGAATGAAAAGGTTTCTTTTGGTTTCTTTGCACGGAGTGGGAAGTATGTGGACTGCCTCCTTTGTGTTAGTAAGAAAGTGAACGAAGAAAGTGCAGTGACTGGAGTCTTCTGCTTCTTGCAACTTGCTAGTCCAGAGCTACAACAAGCACTTCATGTTCAATGGCTATCTGAGCAAACTGCCTTGAAGAGACTAAAAGCTTTAACTTACATGAAAAGGCAGATTAGAAACCCTCTGTACGGAATTATATATGCTCGAAAGATGTTGGAGGGTACTAATCTAGGAGCTGATCAGAAACAGCTGCTACATACCAGTGCTCAATGCCAGCGGCAGCTAAGCAAGGTGCTTGATGACTCGGATCTCGACAGCATTATTGATGGATACTTGGATTTGGAAATGGTTGAATTCACTTTACAAGAAGTACTGACAACTGCCATCAGTCAAGTAATGGCAAAGTGCTCGGGGAAGGGTCTCCACATAAAGAACGACGTCGAAGATGTGATCATAGCCGCGAGATTATATGGTGACAGTCTTAGACTTCAACAAGTATTGGCAGACTTGTTGTTGGTATCAATAGGCTATGCAGCACCTGGAGCTCAGGTAGTTGTTACGGCCCGTCTGAGCAAAGAACAGCTAGCACAGACAGTTCATTTGGCAAACTTGGAGCTCAGCATTACCCTCGCTGGAAGTGGGGTACCAGAAGCACTACTGAACCAAATGTTTGGAAGTGAAGGGAATGAATCTGAAGAAGGGATCAGCCTGTTCATCAGTAGAAAGCTTCTAAAGCTCATGAATGGAGATGTACGTTATCTGAGAGAAGCTGGGAAATCCTCTTTTATAATTTCTGTCGAACTTGCTGGCGCCTGTAACTCTTAA 3369 0.4414 MSSSRPSQSSSNSGRSRSSARVIAQTTVDAKIHADFEESGSSFDYSSSVRVTSGTAGGQPPRSDGVTTAYLHQIQKGKLIQPFGCLLALDDKTLKVIAYSENAPEKLTVVSQAVPSVGDHPVLGIGSDIRSIFTAPSAAALHKALGFGDVSLLNPILVHCKTSGKPFYAIVHRVTGSLVIDFEPVKLYEVPMTAAGALQSYKLAAKAITRLQSLPSGSLERLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVIAEITKPGLEPYLGLHYPATDIPQAARFLFMKNRVRMIVDCRAKLVKVLQDLKLQLDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNEGDEGSEGSDSVQSQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELEDQIFEKNILRTQTLLCDMIMRDAPLGIVSQSPNIMDLVKCDGAALLYKNQIWRLGMTPSDTQLHEIALWLSEHHMDSTGLSTDSLNDAGFPGALSLGDKVCGMAAVRISSKDLIFWFRSHTAAEIRWGGAKHKPGEEDDGKRMHPRSSFKAFLEVVRRRSIPWKDYEMDAIHSLQLILRNAFKDTETLEINAKAINTGLSDLKIEGMQELEAVTSEMVRLIETATVPILAVDIDGLVNGWNTKIAELTGLPVEKAIGKHLLTLVDDTSTDTVQNLLHLALQGKEEQNVQFEINTYGSRVDSGPISLVVNACASRDLQDNVVGVCFVAQDITSQKIVMDKFTRIEGDYKAIVQNPNPLIPPIFGSDQFGWCSEWNLAMTKLTGWKREEVIDKMLLGEVFGIHKACCRLKNQEAFVNLGIVLNKAVAGEENEKVSFGFFARSGKYVDCLLCVSKKVNEESAVTGVFCFLQLASPELQQALHVQWLSEQTALKRLKALTYMKRQIRNPLYGIIYARKMLEGTNLGADQKQLLHTSAQCQRQLSKVLDDSDLDSIIDGYLDLEMVEFTLQEVLTTAISQVMAKCSGKGLHIKNDVEDVIIAARLYGDSLRLQQVLADLLLVSIGYAAPGAQVVVTARLSKEQLAQTVHLANLELSITLAGSGVPEALLNQMFGSEGNESEEGISLFISRKLLKLMNGDVRYLREAGKSSFIISVELAGACNS* 1123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00223 1122 SMART HKATPase_4 1006 1118 IPR003594 -
Pte13g00223 1122 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1006 1115 IPR003594 -
Pte13g00223 1122 SMART gaf_1 218 411 IPR003018 GO:0005515
Pte13g00223 1122 SMART HisKA_10 894 959 IPR003661 GO:0000155|GO:0007165
Pte13g00223 1122 SUPERFAMILY PYP-like sensor domain (PAS domain) 764 870 IPR035965 -
Pte13g00223 1122 SUPERFAMILY PYP-like sensor domain (PAS domain) 623 730 IPR035965 -
Pte13g00223 1122 Gene3D - 934 1112 IPR036890 -
Pte13g00223 1122 CDD PAS 761 872 IPR000014 -
Pte13g00223 1122 SMART pas_2 619 685 IPR000014 -
Pte13g00223 1122 SMART pas_2 749 818 IPR000014 -
Pte13g00223 1122 MobiDBLite consensus disorder prediction 1 24 - -
Pte13g00223 1122 Gene3D - 199 562 IPR029016 -
Pte13g00223 1122 PANTHER OS08G0260000 PROTEIN 67 955 - -
Pte13g00223 1122 MobiDBLite consensus disorder prediction 40 64 - -
Pte13g00223 1122 PIRSF Phytochrome_conventional 1 1122 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Pte13g00223 1122 Pfam Phytochrome region 414 589 IPR013515 GO:0006355|GO:0009584
Pte13g00223 1122 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 956 1111 IPR036890 -
Pte13g00223 1122 SUPERFAMILY PYP-like sensor domain (PAS domain) 74 185 IPR035965 -
Pte13g00223 1122 ProSiteProfiles Histidine kinase domain profile. 901 1118 IPR005467 -
Pte13g00223 1122 ProSitePatterns Phytochrome chromophore attachment site signature. 318 327 IPR013516 -
Pte13g00223 1122 Gene3D PAS domain 73 321 - -
Pte13g00223 1122 Pfam PAS fold 750 872 IPR013767 GO:0006355
Pte13g00223 1122 Pfam PAS fold 620 734 IPR013767 GO:0006355
Pte13g00223 1122 Gene3D PAS domain 611 747 - -
Pte13g00223 1122 PRINTS Phytochrome signature 639 654 IPR001294 GO:0006355|GO:0009584
Pte13g00223 1122 PRINTS Phytochrome signature 732 752 IPR001294 GO:0006355|GO:0009584
Pte13g00223 1122 PRINTS Phytochrome signature 620 636 IPR001294 GO:0006355|GO:0009584
Pte13g00223 1122 PRINTS Phytochrome signature 133 155 IPR001294 GO:0006355|GO:0009584
Pte13g00223 1122 PRINTS Phytochrome signature 431 451 IPR001294 GO:0006355|GO:0009584
Pte13g00223 1122 PRINTS Phytochrome signature 233 252 IPR001294 GO:0006355|GO:0009584
Pte13g00223 1122 PRINTS Phytochrome signature 318 339 IPR001294 GO:0006355|GO:0009584
Pte13g00223 1122 PRINTS Phytochrome signature 516 535 IPR001294 GO:0006355|GO:0009584
Pte13g00223 1122 PRINTS Phytochrome signature 549 567 IPR001294 GO:0006355|GO:0009584
Pte13g00223 1122 PRINTS Phytochrome signature 712 729 IPR001294 GO:0006355|GO:0009584
Pte13g00223 1122 NCBIfam PAS domain S-box protein 624 738 IPR000014 -
Pte13g00223 1122 ProSiteProfiles PAS repeat profile. 750 802 IPR000014 -
Pte13g00223 1122 SUPERFAMILY GAF domain-like 198 398 - -
Pte13g00223 1122 Gene3D - 406 579 IPR043150 -
Pte13g00223 1122 SUPERFAMILY GAF domain-like 409 587 - -
Pte13g00223 1122 Pfam PAS fold 69 185 IPR013654 GO:0006355
Pte13g00223 1122 ProSiteProfiles PAS repeat profile. 617 687 IPR000014 -
Pte13g00223 1122 FunFam Phytochrome 613 744 - -
Pte13g00223 1122 CDD PAS 628 734 IPR000014 -
Pte13g00223 1122 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 218 391 IPR016132 -
Pte13g00223 1122 FunFam Phytochrome 406 535 - -
Pte13g00223 1122 Pfam GAF domain 218 401 IPR003018 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00223 Pte-Chr13 1612824 1618072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00223 1 1119 Histidine Kinase Gene Family AT1G09570 77.946 0.0 1836
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00223 K12120 - cave:132186283 1824.68