Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00219 ATGGGTATCAAGGGTTTAACTAAGCTTTTGGCGGACAATGCTCCAAAAGCTATGAAGGAGCAGAAATTTGAGAGTTATTTTGGACGTAAGATTGCCATTGACGCCAGCATGAGCATCTATCAGTTCCTTATTGTCGTGGGAAGGACTGGGACGGAAATGCTCACTAACGAGGCTGGGGAAGTTACTAGTCATTTGCAAGGCATGTTCACTCGGACAATCAGACTCCTGGAAGCTGGAATTAAGCCAGTATATGTTTTTGATGGGGCACCGCCGGATTTGAAGAAACAGGAGCTGGCAAAACGTTACTCAAGAAGGTCTGTTGCTGGTGAAGATTTACAAGAAGCCATAGAGGATGGGAATAAGGAGGACATAGAAAAATTAAGTAAGCGGACAGTAAAGGTAACAAAGCAGCACAATGAAGATTGCAAAAAACTTTTGAGACTTATGGGGGTCCCTGTTATTGAGGCTCCCTCAGAAGCAGAGGCACAATGTGCTGCACTTTGTAAAACTGGTCAGGTTTATGCTGTAGCTTCAGAAGACATGGATTCTTTAACATTTGGAGCTCCTAAGTTTCTTCGGCATTTGATGGAACCTAGCGCAAGAAAGATTCCAGTAATGGAGTTTGACATTGCAAAGATTTTGGAGGAGCTGAATCTCACTATGGACCAATTCATTGATCTGTGCATTCTATCTGGATGTGACTACTGTGAAAGCATCCGAGGAATTGGAGGCCAGACTGCTTTGAAGCTCATAAGACAACATGGTTCCATAGAAAATATTCTGGAGAACATTAATAAGGAGAGATACCAAATTCCCCAGGATTGGCCGTATCAGGAGGCTAGGTGTCTATTTAAGGAACCTTCTGTCATTACTGAAACAGAACATCCGGAGATTAAGTGGACCTCTCCCGACGAAGATGGGTTGATTACTTTTTTGGTGAATGAAAATGGATTCAACAGTGACAGGATCACAAAGGCAATAGAGAAGATTAAAACTGCAAAGAACAAGTCCACACAAGGCCGGTTAGAATCATTTTTTAAGCCAGTAGCTAATCAGCCTGCTCCCCTTAAACGAAAGGAAAGCAGATGCGTGCTTGGATCTTTCAAACCTTCTATTAAGCATAAGCCATTCTCTTTGCGGCCTTGTAACTTGATGATGTCCATAGTCAATGGAAACTTAGGTTTGCCAATCTTTCTTCAGGGTGCAGAGTACTGTGCTCCATTATTCTAA 1230 0.426 MGIKGLTKLLADNAPKAMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGIKPVYVFDGAPPDLKKQELAKRYSRRSVAGEDLQEAIEDGNKEDIEKLSKRTVKVTKQHNEDCKKLLRLMGVPVIEAPSEAEAQCAALCKTGQVYAVASEDMDSLTFGAPKFLRHLMEPSARKIPVMEFDIAKILEELNLTMDQFIDLCILSGCDYCESIRGIGGQTALKLIRQHGSIENILENINKERYQIPQDWPYQEARCLFKEPSVITETEHPEIKWTSPDEDGLITFLVNENGFNSDRITKAIEKIKTAKNKSTQGRLESFFKPVANQPAPLKRKESRCVLGSFKPSIKHKPFSLRPCNLMMSIVNGNLGLPIFLQGAEYCAPLF* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00219 409 SMART xpgineu 147 219 IPR006086 GO:0004518
Pte13g00219 409 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 219 351 IPR036279 -
Pte13g00219 409 FunFam Flap endonuclease 1 10 222 - -
Pte13g00219 409 Gene3D - 2 218 - -
Pte13g00219 409 Gene3D - 219 286 - -
Pte13g00219 409 CDD H3TH_FEN1-Euk 222 290 - -
Pte13g00219 409 Hamap Flap endonuclease 1 [fen]. 1 347 IPR023426 GO:0016788
Pte13g00219 409 SMART HhH_4 221 254 IPR008918 GO:0003677|GO:0003824
Pte13g00219 409 ProSitePatterns XPG protein signature 2. 150 164 IPR019974 GO:0016788
Pte13g00219 409 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 146 163 IPR006084 -
Pte13g00219 409 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 167 187 IPR006084 -
Pte13g00219 409 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 28 42 IPR006084 -
Pte13g00219 409 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 82 101 IPR006084 -
Pte13g00219 409 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 224 239 IPR006084 -
Pte13g00219 409 SMART 53exo3 29 301 IPR002421 GO:0003677
Pte13g00219 409 FunFam Flap endonuclease 1 219 286 - -
Pte13g00219 409 CDD PIN_FEN1 4 331 - -
Pte13g00219 409 SMART xpgn3 1 108 IPR006085 GO:0004518
Pte13g00219 409 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 363 IPR006084 -
Pte13g00219 409 ProSitePatterns XPG protein signature 1. 80 94 IPR019974 GO:0016788
Pte13g00219 409 SUPERFAMILY PIN domain-like 2 234 IPR029060 -
Pte13g00219 409 Pfam XPG I-region 150 234 IPR006086 GO:0004518
Pte13g00219 409 Pfam XPG N-terminal domain 1 106 IPR006085 GO:0004518
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00219 Pte-Chr13 1595119 1600913 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00219 1 379 Core DNA Replication Machinery Family AT5G26680 83.113 0.0 664
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00219 K04799 - jre:109008307 667.922