Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00218 ATGGTAGGAGATCCGAGCTCTTGGGCTCGTGCTCTCATCAGCATCTCTCCATATACATTCTCAGCCATCGGCATCGCCATCGCCATTGGCATCTCTGTCCTAGGCGCTGCCTGGGGGATTTACATAACAGGAAGTAGTTTGATCGGTGCTGCAATCAAAGCTCCAAGAATCACTTCCAAGAATCTTATCAGTGTGATCTTTTGTGAAGCCGTTGCTATATATGGTGTTATAGTGGCCATCATTCTACAAACAAAGTTGGAGAGTGTTCCGGCAGCAAATATCTATGCACCCGAGTCTCTTAGAGCAGGATATGCAATATTTGCCTCTGGAATTATTGTTGGTTTTGCAAATCTTGTATGTGGGCTGTGCGTGGGGATAATTGGAAGCAGTTGTGCGTTGTCTGATGCCCAAAACTCCACGCTTTTTGTGAAGATTCTTGTCATTGAGATCTTTGGTAGTGCGCTTGGGCTTTTTGGAGTGATTGTTGGAATTATCATGTCTGCTCAAGCTACGTGGCCTTCAAAAGTTTAG 531 0.452 MVGDPSSWARALISISPYTFSAIGIAIAIGISVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVPAANIYAPESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSTLFVKILVIEIFGSALGLFGVIVGIIMSAQATWPSKV* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00218 176 Gene3D - 18 172 IPR035921 -
Pte13g00218 176 SUPERFAMILY F1F0 ATP synthase subunit C 16 85 IPR035921 -
Pte13g00218 176 FunFam V-type proton ATPase proteolipid subunit 18 173 - -
Pte13g00218 176 Pfam ATP synthase subunit C 23 82 IPR002379 GO:0015078|GO:0033177|GO:1902600
Pte13g00218 176 Pfam ATP synthase subunit C 107 166 IPR002379 GO:0015078|GO:0033177|GO:1902600
Pte13g00218 176 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 6 170 - -
Pte13g00218 176 CDD ATP-synt_Vo_c_ATP6F_rpt2 102 166 - -
Pte13g00218 176 SUPERFAMILY F1F0 ATP synthase subunit C 99 167 IPR035921 -
Pte13g00218 176 PRINTS Vacuolar ATP synthase 16kDa subunit signature 118 144 IPR000245 GO:0033179|GO:0046961|GO:1902600
Pte13g00218 176 PRINTS Vacuolar ATP synthase 16kDa subunit signature 62 86 IPR000245 GO:0033179|GO:0046961|GO:1902600
Pte13g00218 176 PRINTS Vacuolar ATP synthase 16kDa subunit signature 36 60 IPR000245 GO:0033179|GO:0046961|GO:1902600
Pte13g00218 176 PRINTS Vacuolar ATP synthase 16kDa subunit signature 145 168 IPR000245 GO:0033179|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00218 Pte-Chr13 1589425 1591100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00218 4 175 Primary Pumps ATPases(2) AT2G25610 90.698 8.22e-107 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00218 K03661 - cpap:110811363 310.071