Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00216 ATGCCTCTGCATGAGCTATTTCGAATGGCTAAAGCAAATTCCAATTCCTCTCAGGATCTGAACCCTCCATGTTCAAGTGGGCAATCATCTTTACCTGAGAGTGGCCTGTGCGAACTTGTGTGGGAAAATGGTCAGATTTTGATGCAAGACCATTTGAACACACCTAAAAGATCTGCAACATCTAAGAGCTTACCATCTCAATGTTTGCCATCTTACAGTGCCAGGGGAAGACATAGGCATGTAGGAAGTAGCAATCCAAGGAGTGGAAAGTTTGGGGAATTTGAGTCTGTAATTGATGAGATCCCCATGTCAGTGCCCTCCAGTGACATGGACTTGCATCAAAATGAAGACTTGGTGCCCTGGTTCAATAATGCAATGGATGATACCCGACACCATGGATATAATTCTGAGTTGCTGCCAGAATTTTCTGTAGTAACTTCAAATGAGCTCCCTAACCGCAATAACTTTTCACTAGTTGAAAAAAGAAGCAGCTACAATCATGCATTTCGAAATTCTTCCAAGAATTCTACGCATAATGGTGGGGATGCTATCCTTGATAATATGTCAAGCCGGCTATACCAATCTTCAGCACTTCAAAGCCAAACATCCCTTACTTCTCCTAGATCAAGAGAACCTGAGATTCAAAATGAGGAAAGTAATGGACACATCCATCTATTTTCTAATAACCTGACTCAGGTGCGACCCACTCGTGGTTTTTCTGACTTTAAGATTCAGAGCCAAGATCCAGAATTACCTAGCAGTAGCTCCACTGTGATGAATTTCTCTCATTTTGCGCGGCCTGCTGCTCTTCTGAGGAATAATCTTCAGAGCATTGGTGCCACGTGTGGATTGTCTTCTGCAAGAACTGATAGTGTGGCAAGTAAGGCTAAGGATTTTACAGCACGTAGCAACCATATTCCCACATCAAGACCAATTGAGTCAAACAATGGTAATGCAAATGAGTCGACAGCTCAAGTTATCAAGCAGCCATCCAAAGTTGATCTATCATCAATGGAGTCAAGACCTGATCAACAGCGTGCTCTACCCGTCAAACAATCTGAGCCTGTTGGTCAAGCTGATGCGACGAAGGATGAACATTGCAGTCAAATCCCTGTTGTAAATGCAGGAAAAGGAGTGATTGATGGTGAAAAGAGTACAGAGCCAGCAGCAGCATCTTCGGTCTGTTCTGGAAATAGTGTGGAGAAGGCTTCCGATGATCCAATTCAACATAAAAAGCGGAAAAGTCGGGATAATGATGGATCTGAGTGCCATAGTGAAGATGTTGAGGAAGAATATGTGGATGTAAAAAAAGCGGCCACTGCTCGAGGAGGTCCCAGTTCTAAGAGAAGTCGAGCAGCAGAAGTTCATAATCTATCTGAAAGGAGGCGAAGGGACAGGATCAATGAGAAAATGCGTGCCCTACAAGAGCTTATACCAAACTGCAACAAGGTGGACAAAGCTTCAATGCTTGATGAAGCCATTGAGTATCTCAAAACACTTCAACTCCAAGTACAGATGATGTCAATGGGAGCCGGTCTGTACATGCCCCAAATGATGTTCCCACCTCAAATGCACCATATGACTTCATTTTCACCAATGGGTGTTGGGATGCACATGGGATTTGGAATGGGTTATGGAATGGCTATGCCTGACATCAATGGCTCATCTTCTGCCTACCCGATGATGCAGATGCCCACCGTACAAGGAACACATTTTCCTACTCCACCCAGATCAGTACAAACAGGGTTACATGGGATGGCAGGATCAAACATTGAAGTTTTTGGATACCCTAGTCAAGGACTTCCTATTTCAACGTCACATGCACCTTTAGTTTCAGGAGCTCCTCAAATGAAATCTATGGAACTTAATGCCTATGAAGCAGGAGGGCCTGTGGGCAATATGGATTCAGCATCAGTGTCTGGAACAAAAGATTCTACTGTACACATGACCTCTCAAGTGTCACTCAGCAATGATGCCAATGAAGAATTAAACCAAATTCCTAATCAGGCTACACCTTCTACTGGTTACCATGATGGTCGTACCCAAGAAGTTAATGATAGTGGAACTTGTAATTCTGGAAAAGAAGATCGAGCTGAGCCTAGTTATGATTAA 2112 0.4351 MPLHELFRMAKANSNSSQDLNPPCSSGQSSLPESGLCELVWENGQILMQDHLNTPKRSATSKSLPSQCLPSYSARGRHRHVGSSNPRSGKFGEFESVIDEIPMSVPSSDMDLHQNEDLVPWFNNAMDDTRHHGYNSELLPEFSVVTSNELPNRNNFSLVEKRSSYNHAFRNSSKNSTHNGGDAILDNMSSRLYQSSALQSQTSLTSPRSREPEIQNEESNGHIHLFSNNLTQVRPTRGFSDFKIQSQDPELPSSSSTVMNFSHFARPAALLRNNLQSIGATCGLSSARTDSVASKAKDFTARSNHIPTSRPIESNNGNANESTAQVIKQPSKVDLSSMESRPDQQRALPVKQSEPVGQADATKDEHCSQIPVVNAGKGVIDGEKSTEPAAASSVCSGNSVEKASDDPIQHKKRKSRDNDGSECHSEDVEEEYVDVKKAATARGGPSSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQMMSMGAGLYMPQMMFPPQMHHMTSFSPMGVGMHMGFGMGYGMAMPDINGSSSAYPMMQMPTVQGTHFPTPPRSVQTGLHGMAGSNIEVFGYPSQGLPISTSHAPLVSGAPQMKSMELNAYEAGGPVGNMDSASVSGTKDSTVHMTSQVSLSNDANEELNQIPNQATPSTGYHDGRTQEVNDSGTCNSGKEDRAEPSYD* 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00216 703 CDD bHLH_AtPIF_like 451 513 IPR047265 -
Pte13g00216 703 MobiDBLite consensus disorder prediction 55 70 - -
Pte13g00216 703 MobiDBLite consensus disorder prediction 295 464 - -
Pte13g00216 703 MobiDBLite consensus disorder prediction 195 224 - -
Pte13g00216 703 MobiDBLite consensus disorder prediction 295 347 - -
Pte13g00216 703 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 454 528 IPR036638 GO:0046983
Pte13g00216 703 MobiDBLite consensus disorder prediction 635 703 - -
Pte13g00216 703 MobiDBLite consensus disorder prediction 195 210 - -
Pte13g00216 703 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 451 500 IPR011598 GO:0046983
Pte13g00216 703 MobiDBLite consensus disorder prediction 389 403 - -
Pte13g00216 703 MobiDBLite consensus disorder prediction 55 91 - -
Pte13g00216 703 MobiDBLite consensus disorder prediction 404 437 - -
Pte13g00216 703 MobiDBLite consensus disorder prediction 635 689 - -
Pte13g00216 703 Gene3D - 446 509 IPR036638 GO:0046983
Pte13g00216 703 PANTHER TRANSCRIPTION FACTOR PIF3 1 665 IPR044273 GO:0003700|GO:0006355
Pte13g00216 703 Pfam Helix-loop-helix DNA-binding domain 455 501 IPR011598 GO:0046983
Pte13g00216 703 FunFam Basic helix-loop-helix transcription factor 446 509 - -
Pte13g00216 703 SMART finulus 457 506 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00216 Pte-Chr13 1579624 1584439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00216 1 568 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 37.221 6.54e-75 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte13g00216 HLH 7.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00216 K12126 - qsa:O6P43_007367 611.298