Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00204 ATGGCTTCAGTAGGTGTGGTGGCAAACTCTGGCGGGAGAGAAGCCAGTGACCATGCAGCAGGTGTTGATCGACTGCAGGAGGAAATGAGTGATATGAAAATAAGGGATGACAAAGAAGTAGAAGCGACAGTGGTTGATGGTCACGGGACAGAGATGGGTCATGTCATTGTGACAACTATAAGTGGTAGAAATGGTCAACCGAAGCAGACCATAAGTTATATTGCAGAGCGTGTTGTCGGGCATGGATCCTTCGGAGTCGTTTTTCAGGCCAGATGTCTTGAGACTGCTGAAACCGTGGCGATAAAAAAGGTTCTTCAGGACAAGAGATACAAGAACCGGGAGCTTCAGACAATGCGTCTACTTGACCATCCAAATGTTGTCTCTCTGAAGCATTGTTTCTTTTCAACAACTGGAAAGGATGAGCTGTATCTTAATTTAGTACTTGAGTATGTTCCTGAAACTGTTCATCGTGTGATCAGACACTACAACAAGTTGAACCAACGGATGCCACTGATATATGTAAAACTCTACGCCTATCAGATCTTTAGAGCACTTTCTTATATTCATCGCTTTATAGGAGTATGTCATCGGGATATAAAACCTCAAAATCTACTGGTTAATCCACATACCCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAAGTCTTGGTGAAAGGGGAGCCAAACATATCGTACATATGCTCTAGGTATTACAGAGCACCGGAGCTTATATTTGGAGCAACTGAGTATACTACTGCTATTGATATGTGGTCTGTTGGATGTGTGTTGGCAGAATTACTGCTAGGCCAGCCTTTGTTTCCTGGTGAGAGTGGTGTTGACCAGCTTGTTGAGATAATAAAGGTTTTGGGAACCCCAACTAGAGAGGAGATTAAATGTATGAATCCCAACTACACTGAGTTTAAGTTCCCTCAAATTAAAGCTCATCCATGGCATAAGATTTTTGATAAGCGAATGCCTCCAGAAGCAGCAATTGATCTGGTTTCAAGACTATTGCAGTATTCCCCCAACCTAAGATGCACAGCTCTTGAAGTCTTGATCCATCCTTTCTTCGATGAGCTCCGGGATCCAAACATCCGCCTACCTAATGGACGGTTTCTTCCACCATTATTCAACTTCAAGTCTCATGAATTGAAGGGTGTTCCTCCTGAACTTGTTGTGAAGTTGGTTCCCGAGCATGCTAGGAAGCAATTGCCCTTTCTTGGATTCTGA 1233 0.4323 MASVGVVANSGGREASDHAAGVDRLQEEMSDMKIRDDKEVEATVVDGHGTEMGHVIVTTISGRNGQPKQTISYIAERVVGHGSFGVVFQARCLETAETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTGKDELYLNLVLEYVPETVHRVIRHYNKLNQRMPLIYVKLYAYQIFRALSYIHRFIGVCHRDIKPQNLLVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDMWSVGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFDKRMPPEAAIDLVSRLLQYSPNLRCTALEVLIHPFFDELRDPNIRLPNGRFLPPLFNFKSHELKGVPPELVVKLVPEHARKQLPFLGF* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00204 410 FunFam Shaggy-related protein kinase kappa 153 402 - -
Pte13g00204 410 MobiDBLite consensus disorder prediction 1 23 - -
Pte13g00204 410 ProSiteProfiles Protein kinase domain profile. 73 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte13g00204 410 ProSitePatterns Protein kinases ATP-binding region signature. 79 103 IPR017441 GO:0005524
Pte13g00204 410 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 37 404 - -
Pte13g00204 410 FunFam Glycogen synthase kinase-3 beta 57 152 - -
Pte13g00204 410 Gene3D Transferase(Phosphotransferase) domain 1 153 402 - -
Pte13g00204 410 Pfam Protein kinase domain 75 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte13g00204 410 Gene3D Phosphorylase Kinase; domain 1 57 152 - -
Pte13g00204 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Pte13g00204 410 SMART serkin_6 73 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte13g00204 410 SUPERFAMILY Protein kinase-like (PK-like) 72 384 IPR011009 -
Pte13g00204 410 CDD STKc_GSK3 68 361 IPR039192 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00204 Pte-Chr13 1456600 1460150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00204 79 361 Core Cell Cycle Gene Families AT1G76540 35.932 2.02e-54 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Pte13g00204 Pkinase 5e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00204 K27413 - qsu:112005327 753.436