Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00183 ATGGACTGGGCTGATTATGACCCAATCGACCTGGATTTTCCGGGATTTCTGAATGATTCGCAGGACTGGGAGCTTAAGTCGTCCAAATCTAGCAACTCACGATCAATAATGCATCGGCACCAAAAACCGGGTTCGTCTTCTCGAAGCACTGGGATACTTGTCGATAGCAGATCATCAAGAAGCCCTTTGGGACAATATGGTTTCCTCAGAAACAATTTTGATGTCAGCCTTGTTGGTGATAGTCACGCGGCTGAAGATGTTCCAGATGCTGCCTCAGAGAAAGAACTGGGGAATGAATATTTCAAGCAGAAAAAGTTTAAAGAAGCCATTGACTGCTACTCTAGGAGCATAGCCTTTACACCATCAGCTGTAGCTTATGCAAACAGGGCAATGGCCTATCTTAAACTAAAAAGATTCCTAGAAGCTGAGGAGGACAGCACAGAGGCCTTGAATCTAGATGATCGTTATATAAAAGCATATTCACGTCGTGCAACAGCTAGAAAGGAACTTGGGAAACTTAAAGAATCCATGGAGGATGCTGAATTTGCCTTACGGTTGGAGCCTAATAATCAAGACATCAAGAAGCAATATGCCGAGGCTAAATCTTTGTATGAAGAGGGTATCCTTCAGAATGCAACTGGAGCTCTAAGGCGCCCTGTACAAGGAGCAGAGAAACCGAGGAAGTTAGAGACACGTGATGGTGCCCTTCCTCTTTCAAGTAGCTCCACTCAAAAGTCAAAAGTTACTGAAGCTCAGTATCAAGCCAAGGAAAATGGTCATCAATCTCTTGTCAGGGAAATGGATAGAAATATTACTGGTGTTGCAGAAAGCAGAGCTGAAGGAAGTATAGATTCTTTCAAAGATGGCGTTTCAAGCTCCAACACGGTTGATGTTAAGAGTAGCAACAAAATCCGCAAGCAAGTGCTTAGTGCATCTGTTCAAGAGCTTGCTTCTCGTGCGGCTTCACGAGCTGTGGCAGAAGCAGCAAAGAACATCACACCACCATCTTCTGCCTATCAATTTGAGGCATCATGGAGAGGATTTTCTGGCGATCAAACCCTGCAAGCTCGTCTTCTCAAGTCTGTAGCGCCTTCCAATTTGCCGCAAATATTCAAAGATGCCTTGTCTTCTGCCCTGTTGATTGATATTATTAAGTGTGTCAGCTCATTTTCCCAGGAGCAGATGGATGTTGCAGTAAGTTATTTAGACCATTTAACCAAGGTGTCGAGATTTGACTTGCTCATTATGTCTCTTTCTTCTAGTGAGCGAGAGGATCTTCGAAAGCTTTGGGATGAAGTGTTCTGTAGTGAAGCAACCCCTATGAAGTACGCAGAGATTATTGGCAACCTTCGATCTAAATATTTACTCTGA 1371 0.4376 MDWADYDPIDLDFPGFLNDSQDWELKSSKSSNSRSIMHRHQKPGSSSRSTGILVDSRSSRSPLGQYGFLRNNFDVSLVGDSHAAEDVPDAASEKELGNEYFKQKKFKEAIDCYSRSIAFTPSAVAYANRAMAYLKLKRFLEAEEDSTEALNLDDRYIKAYSRRATARKELGKLKESMEDAEFALRLEPNNQDIKKQYAEAKSLYEEGILQNATGALRRPVQGAEKPRKLETRDGALPLSSSSTQKSKVTEAQYQAKENGHQSLVREMDRNITGVAESRAEGSIDSFKDGVSSSNTVDVKSSNKIRKQVLSASVQELASRAASRAVAEAAKNITPPSSAYQFEASWRGFSGDQTLQARLLKSVAPSNLPQIFKDALSSALLIDIIKCVSSFSQEQMDVAVSYLDHLTKVSRFDLLIMSLSSSEREDLRKLWDEVFCSEATPMKYAEIIGNLRSKYLL* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00183 456 ProSiteProfiles TPR repeat profile. 90 123 IPR019734 GO:0005515
Pte13g00183 456 SMART tpr_5 90 123 IPR019734 GO:0005515
Pte13g00183 456 SMART tpr_5 124 156 IPR019734 GO:0005515
Pte13g00183 456 SMART tpr_5 157 190 IPR019734 GO:0005515
Pte13g00183 456 PANTHER OS05G0129900 PROTEIN 11 456 - -
Pte13g00183 456 ProSiteProfiles TPR repeat profile. 157 190 IPR019734 GO:0005515
Pte13g00183 456 MobiDBLite consensus disorder prediction 215 248 - -
Pte13g00183 456 Pfam Potential Monad-binding region of RPAP3 334 423 IPR025986 -
Pte13g00183 456 Pfam Tetratricopeptide repeat 94 118 IPR001440 GO:0005515
Pte13g00183 456 Gene3D Tetratricopeptide repeat domain 79 188 IPR011990 GO:0005515
Pte13g00183 456 Pfam Tetratricopeptide repeat 125 153 IPR019734 GO:0005515
Pte13g00183 456 SUPERFAMILY TPR-like 86 202 IPR011990 GO:0005515
Pte13g00183 456 MobiDBLite consensus disorder prediction 24 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00183 Pte-Chr13 1364936 1369544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00183 94 160 U-box Gene Family AT3G07370 41.176 3.94e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00183 K23002 - gmx:100784528 490.73