Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00177 ATGTCACATAGCAACAACAATGTAGCTGGTGTCGATAACACTTTCAGAAGAAAATTCGATCGAGAAGAGTATCTCGAACGAGCTCGGGAACGCGAAAGGCAGGAGTCGGAGGCACATTCCAAAACAAAATCGAAAGGTCCTCCAGTGCAAAGAAAACCCTTGAAGCACAGAGATTATGAAGTTGACCTTGAATCCAGGTTGGGGAAAACTCAGGTTGTTACTCCAGTTGCACCTTTGAGCCAGCAGGCTGGATACTATTGTTCAGTTTGTGAATGTGTTGTGAAAGATTCAGCAAACTACTTGGATCACATAAATGGAAAGAAACATCAAAGAGCACTCGGAATGTCCATGCGCGTAGAGCGTGCCAGTCTTAAACAGGTTCAGGAGCGTTTTGAAGTTCTGAAGAAGCGAAAAGATCCTGGGAGCTTTACTGAGCAAGATTTTGATGAGCGGATTCTGAAGCAGCAACAAGAAGAGGAAGAAAGGAAACGCCAGCGTCGAGAAAAGAAGAAAGAAAAAAAGAAGGAGAAGTTAGCAGAGGAAGAAACCGAGATGGATCCAGACGTTGCTGCAATGATGGGATTTGGAGGTTTTCGATCGACAAAGAAATGA 612 0.4412 MSHSNNNVAGVDNTFRRKFDREEYLERARERERQESEAHSKTKSKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLKQVQERFEVLKKRKDPGSFTEQDFDERILKQQQEEEERKRQRREKKKEKKKEKLAEEETEMDPDVAAMMGFGGFRSTKK* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00177 203 Coils Coil 153 184 - -
Pte13g00177 203 PANTHER ZINC FINGER MATRIN-TYPE PROTEIN 2 10 203 IPR040107 GO:0000398|GO:0005681
Pte13g00177 203 MobiDBLite consensus disorder prediction 20 44 - -
Pte13g00177 203 Pfam Zinc-finger of C2H2 type 85 109 - -
Pte13g00177 203 SMART ZnF_U1_5 82 116 IPR003604 GO:0003676|GO:0008270
Pte13g00177 203 MobiDBLite consensus disorder prediction 20 56 - -
Pte13g00177 203 SUPERFAMILY beta-beta-alpha zinc fingers 80 123 IPR036236 -
Pte13g00177 203 MobiDBLite consensus disorder prediction 138 166 - -
Pte13g00177 203 MobiDBLite consensus disorder prediction 138 203 - -
Pte13g00177 203 FunFam zinc finger matrin-type protein 2-like 79 117 - -
Pte13g00177 203 Gene3D Classic Zinc Finger 79 117 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00177 4 147 C2H2 Transcription Factor Family AT3G05760 82.639 8.40e-87 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte13g00177 zf-C2H2_jaz 1.9e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00177 K12848 - cpap:110815313 305.064