Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00167 ATGTCACTTCGGCCAAGTGAGAGAACCGAGAATCGTCGCCAGAGGTACAAGGTCGTGGTTGATGCCGATGAAGGTCGGAGGAGGCGGGAGGATAACATGGTTGAGATCCGTAAGAATCGAAGGGAGGAGAGCTTACTCAAGAAGAGACGTGAGGGGCTTCAAGCTCAGCAGATGCCTCCTACAATTCAGTCTACTGGACTAGACAAAAAGTTGGAGTATCTACCATTTGCTGGTGTCTGGTCAGCTGATGTTAGCCTACAGCTTGAGGCAACTACTCAGTTCAGAAAATTGCTTTCTATCGAGCGTAGCCCTCCAATTGAAGAAGTTATACAATCAGGCGTTGTTCCTCGATTTGTTGAATTTCTAATGAGGGAAGATGTTGCACAACTTCAGTTTGAAGCTGCATGGGCATTGACAAATATAGCATCTGGAACATCTGAGCACACAAAAGTGGTGATCGATCATGGGGCTGTCCCAATATTTACCACACTTCTTAGTTCTCCTAGTGATGATGTGCGGGAACAGGCAGTGTGGGCACTTGGAAATATTGCTGGTGATTCTCCAAGATGCCGTGATCTTGTCCTTGGTCAAGGAGCTTTGCTTCCTTTGTTAGCGCAATTGAATGAACAAGCCAAGCTTTCTATGTTAAGGAATGCTACATGGACCCTTTCTAATTTCTGTAGGGGCAAGCCACAGCCTTCTTTCGATCAGGTGAAAGCTTCTCTTCCTGCTCTTGCAAGTCTAATCCTCTCAAACGATGAAGAAGTGTTGACTGATGCATGCTGGGCACTGTCATATCTTTCTGATGGTACAAATGACAAAATTCAAGCTGTTATTGAAGCCGGTGTCTGCAGGCGGCTTGTTGAGCTTTTAATGCATCCATCTCCTCCTGTTCTTGTTCCTGTTCTTCGCACTGTTGGAAATATAGTCACTGGAGATGATATGCAGACCCAGGTTATTGTTGAACATCAAGCCCTCCCTTGTCTTCTGGGCTTGTTGACGAATAATTACAAGAAAAGTATCAAGAAGGAAGCTTGTTGGACTATTTCAAATATAACTGCCGGTAACAAGCAGCAGATTCAGGCTGTGATAGAGGCTGGTATAATTTCGCCTCTTGTAAATTTGCTTCAAAATGCTGAATTTGATATCAAGAAAGAAGCTGCTTGGGCGATATCAAATGCTACTTCTGGCAGTACTCCCGAACAAATCAAGATTCTGGTAAGCCAGGGATGTATCAAGCCATTGTGTGATCTTCTCGTATGCCCTGATCCAAGGATTGTAACGGTATGTCTAGAAGGCCTTGAGAACATCTTGAAGGTTGGAGAAGTTGAGAAAACTATAGGCACTGCAGAAGGTGTGAATCCATACGCTCAAATGATTGATGACGCTGAAGGGTTGGAGAAAATTGAGTCGCTACAAAGTCATGACAACAATGAGATTTATGAGAAGGCAATGAAAATCCTGGAAACCTACTGGATGGAGGAAGAGGACGAGACTGCCCCTCCAGGTGAAACTCCCCAAGGAGGTTTCAATTTTGGTGGAAGCGAACAAACTGTTCCCACCAGCGGCTTCAATTTCAGTTAG 1584 0.4476 MSLRPSERTENRRQRYKVVVDADEGRRRREDNMVEIRKNRREESLLKKRREGLQAQQMPPTIQSTGLDKKLEYLPFAGVWSADVSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLMREDVAQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFTTLLSSPSDDVREQAVWALGNIAGDSPRCRDLVLGQGALLPLLAQLNEQAKLSMLRNATWTLSNFCRGKPQPSFDQVKASLPALASLILSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCRRLVELLMHPSPPVLVPVLRTVGNIVTGDDMQTQVIVEHQALPCLLGLLTNNYKKSIKKEACWTISNITAGNKQQIQAVIEAGIISPLVNLLQNAEFDIKKEAAWAISNATSGSTPEQIKILVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEVEKTIGTAEGVNPYAQMIDDAEGLEKIESLQSHDNNEIYEKAMKILETYWMEEEDETAPPGETPQGGFNFGGSEQTVPTSGFNFS* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00167 527 Pfam Armadillo/beta-catenin-like repeat 187 228 IPR000225 GO:0005515
Pte13g00167 527 Pfam Armadillo/beta-catenin-like repeat 272 310 IPR000225 GO:0005515
Pte13g00167 527 Pfam Armadillo/beta-catenin-like repeat 242 268 IPR000225 GO:0005515
Pte13g00167 527 Pfam Armadillo/beta-catenin-like repeat 103 143 IPR000225 GO:0005515
Pte13g00167 527 Pfam Armadillo/beta-catenin-like repeat 314 354 IPR000225 GO:0005515
Pte13g00167 527 Pfam Armadillo/beta-catenin-like repeat 399 437 IPR000225 GO:0005515
Pte13g00167 527 Pfam Armadillo/beta-catenin-like repeat 356 395 IPR000225 GO:0005515
Pte13g00167 527 Pfam Armadillo/beta-catenin-like repeat 146 184 IPR000225 GO:0005515
Pte13g00167 527 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 156 198 IPR000225 GO:0005515
Pte13g00167 527 MobiDBLite consensus disorder prediction 496 527 - -
Pte13g00167 527 PIRSF Importin_alpha 2 526 IPR024931 GO:0005737|GO:0006606|GO:0061608
Pte13g00167 527 Gene3D - 76 493 IPR011989 -
Pte13g00167 527 SUPERFAMILY ARM repeat 11 497 IPR016024 -
Pte13g00167 527 Pfam Importin beta binding domain 12 92 IPR002652 GO:0006606|GO:0061608
Pte13g00167 527 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Pte13g00167 527 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 324 367 IPR000225 GO:0005515
Pte13g00167 527 PANTHER IMPORTIN ALPHA 12 498 - -
Pte13g00167 527 FunFam Importin subunit alpha 11 50 - -
Pte13g00167 527 Gene3D - 11 50 IPR036975 GO:0006606
Pte13g00167 527 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 113 156 IPR000225 GO:0005515
Pte13g00167 527 SMART arm_5 399 439 IPR000225 GO:0005515
Pte13g00167 527 SMART arm_5 145 185 IPR000225 GO:0005515
Pte13g00167 527 SMART arm_5 230 269 IPR000225 GO:0005515
Pte13g00167 527 SMART arm_5 271 311 IPR000225 GO:0005515
Pte13g00167 527 SMART arm_5 313 354 IPR000225 GO:0005515
Pte13g00167 527 SMART arm_5 356 396 IPR000225 GO:0005515
Pte13g00167 527 SMART arm_5 102 143 IPR000225 GO:0005515
Pte13g00167 527 SMART arm_5 186 228 IPR000225 GO:0005515
Pte13g00167 527 FunFam Importin subunit alpha 72 493 - -
Pte13g00167 527 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 240 282 IPR000225 GO:0005515
Pte13g00167 527 Pfam Atypical Arm repeat 454 499 IPR032413 -
Pte13g00167 527 MobiDBLite consensus disorder prediction 510 527 - -
Pte13g00167 527 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 367 395 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00167 Pte-Chr13 1259624 1263547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00167 131 388 U-box Gene Family AT3G46510 22.868 9.49e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00167 K15042 - zju:107411813 874.774