Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00166 ATGATCGCTGATAATCAAAAGACTTGTACGGACTGCAAAACCAGAAAGACGCCATTATGGAGGGTGGGGCCAGCAGGACCTAAGACACTGTGCAATGCATGCGGGATAAAATACAGGAAGAGAAAGTTGCCTTCTGTGAAAGGACAGGAGAAGAGAGACATTGGTCACCGTAGTCATAGTGATGGTGCTGCCGCGTCGTCCGTTTCTTCCAGTACTATTCCTGCCGGCGCAGCTAGTAAAGCTTCTAGCAATGCTGACTACAATTTTAGTGTTCCGTTGAAGATAAGGTTGAAAGCTTTGGGTGAAGAATTTCTGTTACAAAGGTCACCCTCAATAGTGAAAAGACAGAAATTTCAGAAGTGGAGGAAGTTGGGGGAGGAGGAACAAGCAGCTTTTTGTTTAATGGCTTTGTCCTGTGGCTATATCTTTGCCTAA 435 0.4529 MIADNQKTCTDCKTRKTPLWRVGPAGPKTLCNACGIKYRKRKLPSVKGQEKRDIGHRSHSDGAAASSVSSSTIPAGAASKASSNADYNFSVPLKIRLKALGEEFLLQRSPSIVKRQKFQKWRKLGEEEQAAFCLMALSCGYIFA* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00166 144 SMART GATA_3 3 54 IPR000679 GO:0006355|GO:0043565
Pte13g00166 144 CDD ZnF_GATA 8 52 IPR000679 GO:0006355|GO:0043565
Pte13g00166 144 PANTHER OS01G0976800 PROTEIN 4 143 - -
Pte13g00166 144 ProSiteProfiles GATA-type zinc finger domain profile. 3 57 IPR000679 GO:0006355|GO:0043565
Pte13g00166 144 Gene3D - 4 65 IPR013088 GO:0006355|GO:0008270
Pte13g00166 144 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 6 44 - -
Pte13g00166 144 MobiDBLite consensus disorder prediction 43 83 - -
Pte13g00166 144 MobiDBLite consensus disorder prediction 62 83 - -
Pte13g00166 144 Pfam GATA zinc finger 9 43 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00166 Pte-Chr13 1255023 1256601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00166 2 138 C2C2-Gata Transcription Factor Family AT3G06740 42.446 6.63e-26 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pte13g00166 GATA 1.9e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00166 - - qsa:O6P43_011056 145.976