Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00164 ATGGCAGAGTTAGCCAAAGCGCACTCAAAGGCTTTGATGCCTTCGTTTGGAGATGGTAAAGAAGATCAACGCAAGATTGAAGCTCTTACACAAGAGATTACCGATTTGATAAGAAGATCAGAGAAGAGACTGCAGAGACTTTCTGTTGCAGGGCCTTCTGAAGACTCAAATGTCAGAAAAAATGTCCAGCGTTCTCTTGCAACTGACCTTCAAAATCTTTCAGTGGAGCTTCGTAAGAAACAGTCAATTTATTTGAAGCGCCTCAGGCAGCAAAAAGAGGGTCAAGATGGGGTTGACTTAGAGATGAATAGAAATGGGGTAAGATATCAAGAAGATGATGATTTGGACAATATGGTTTTTTCTGAGCACCAGATGGCCAAGCTCAAGAAAAGTGAAGCGTTCACAGTCGAAAGAGAAAGAGAGATCCAACAGGTTGTGGAATCTGTAAATGAGCTTGCTCAAATAATGAAGGATTTATCTGTATTAGTAATAGACCAGGGAACTATTGTGGATAGAATAGACTACAACATTCAGAATGTTGCGACCACAGTCGAGGAAGGGCTTAAACAACTGCAAAAGGCAGAAAGAAGTCAGAAACAAGGGGGCATGGTAATGTGTGCGACAGTGCTCGTAATCATGTGCTTCGTCATGTTGGTCCTTCTGATTCTTAAAACAATACTCTTTTGA 687 0.4134 MAELAKAHSKALMPSFGDGKEDQRKIEALTQEITDLIRRSEKRLQRLSVAGPSEDSNVRKNVQRSLATDLQNLSVELRKKQSIYLKRLRQQKEGQDGVDLEMNRNGVRYQEDDDLDNMVFSEHQMAKLKKSEAFTVEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVEEGLKQLQKAERSQKQGGMVMCATVLVIMCFVMLVLLILKTILF* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00164 228 ProSitePatterns Syntaxin / epimorphin family signature. 138 177 IPR006012 GO:0005484|GO:0006886|GO:0016020
Pte13g00164 228 MobiDBLite consensus disorder prediction 1 21 - -
Pte13g00164 228 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 132 194 IPR000727 -
Pte13g00164 228 Coils Coil 19 39 - -
Pte13g00164 228 Gene3D - 1 186 - -
Pte13g00164 228 Pfam SNARE domain 168 220 IPR000727 -
Pte13g00164 228 SUPERFAMILY t-snare proteins 2 187 IPR010989 GO:0016020|GO:0016192
Pte13g00164 228 CDD SNARE_syntaxin16 137 193 - -
Pte13g00164 228 SMART tSNARE_6 127 194 IPR000727 -
Pte13g00164 228 PANTHER SYNTAXIN 6 213 IPR045242 -
Pte13g00164 228 FunFam Syntaxin-43 1 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00164 Pte-Chr13 1242002 1244413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00164 1 217 SNARE and Associated Proteins AT3G05710 81.193 1.14e-128 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00164 K08489 - twl:120008553 385.571