Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00162 ATGGTAAGGGGAGGAAAAGTTGGTGGTAGACGCAAGCCTAGAAAAAGGACTCGGTCGAAGGGTGGAGACTCTGATGAGTCGGACGAGGATTTTGTAGTCTCAGAGGAGGAGAAAGCGCTCTGTGAAGGTTCAGAGGATTATTCCGCCTCCTTAGATGGGGATGCTTCTGAGGAAAGTTGTGGTCGTTTTATCGAGGAGGAAGAAGAGGAGGAGGAAATCAAACAATGGAGGAAACCCAATAAATCAAGAAGGGAGAATGGGGTTTCTCATCAAGCAAAAGTTGGATGCAGAACATCAAGGAAGCGGGGAAGGAGTGCATTTCGAGGATTCATTGAAGGAAAAGATGCTGGCGATGATAGTGATGAAGATTATGATTATGAAGAGGAGGATGAAGATGAGGAATTTTCACTGGATGAAGATGACAGTTCAGATGAGGATGATGAAATATGGGTGACAAAGAGGAAAAATGACATGAAAACTGCCAAGCAGAATTTACAGAAAAAAATTCCTGGTAGACGTAAAAAAAGGAAGAGATCCATGGCTTCAAAGCAGCCATTGAGAAAGAAAAGAAGAACAAATTGTGGATTAAGGAAAAATGTTAGGCGTGACAATCCAGTTGATTCTGTACATATCGTCCAAAATGCTAGGGTCAAGAGTAAGAAGACCAGTCGAAGAAAGAAGTCTTCCCTTGCATCTTCAGATTCAGATTTTGCATTTTCTGAATCATCAACTTACGAGTATACGATCTCTGAGGAAGAGAGAGAGCAGGTTAGAGAAGCAAAAGAATTGTGTGAGAATTTGAGAAACAATTCCTCGTTGCCAACTAATGTCAATGAAAATGGGCACGAACTGCAACAAAGAAAGCTTCCTGCGAGGAAGAGCAAGGACAAAATGACTGAACCTTTTTGTAGGAAAGGTAAAGAGAAGATAGATGAATTAAAGACTGAGGTGGGAAAGCAGGTGTGTGGGATTTGTTTGTCTGAGGAAGACAAGAGAAGAGTTAGAGGGAATCTTAATTGTTGTACTCATTATTTTTGTTTTGCCTGTATCATGGAGTGGGCAAAAGTGGAATCTCGTTGCCCATTGTGCAAGCAGAGATTTCAAACAATCACTAAACCTGCCAGATCAACCACAGGAATTGATCTGAGAGAAGTCGTGATACAAGTTCCTGAACGTGATCAGGTTTATCAGCCGTCTGAAGAAGAGCTCAGGAGTTACATTGATCCATATGAGTGTGTGATTTGTTCTGAATGCCATGAAGGTGGTGACGATGGGCTGATGTTACTGTGCGATATTTGTGATACACCTGCACACACATTTTGTGTTGGTCTAGGCCGGGAAGTACCCCAAGGTGATTGGTTTTGTTTTGGCTGTAGACCTGCTCAGAATGCTCTTTTGGGATCCTCTTCAAGTTCCCAAGCAGAAGAACGGGTGCGTGGTCAGAGGATGACCAGTCAGGCGGCACATACTCAACAGTCACCTCTGGTAAATGTTAGGGAAGGCATTGACCTCAACTTGTTATCACCGCCACCTTCATCTTTGAGCCAAGGATTCAGTAACCTTTCATCTCCAAGATTGGCAACTAGAGGCATACAAGGCCCTTCTCCAATGTCTGGAGGAGGGGCCCCAACCCTATCAGGTAGACGCTGGATACAGAGGCAAATTCAGCAACTTCTGTCTATGGACAGAATGAATTCTACCGTTACCAGAATGGATGGGTTAGTAAATGCAAACACAGCTGGTGATAATTTGTATGTATCTCAAATCAGTAGACATCCAACTATGGTTCAGAATACAAGGAGCCAGGATATGGGCACAACATTTCGTCCGCTTCCTTGTGAGCGAGTACATTATAATAACAACTCTCCACTGGAGCGGACTGGTGATTCATACTTGACAAGAACTAGCAATATAGGAAGTCAAGGATTGCAAGATTCATTTGCAGTGACTAATGGATCTCTGTATGGCCCGTTGTGGCCTGGACTTCTTGGTATGCAAACAGTATCTAATGAGGAAGTTCATCAATCCAATGGCAGATGGAACATTGCCACTGACGGTTTTGGTTCCCCTAATGCTGATGCAGAAGACAACAACTTTCATTTGGTGCAGTCACTGGTTAACAGTCATCTTAAGAAGTTGTCCCACGATGCTGGTCTGTGTCAGAGCACTTTGAAGGAAATCACAAGGAGTTGCACGCACACACTACTTGCTGCTTGTGGTCTCGAGCACAAGAGAGGCGAGGTCTGTGCAGTGCCCGCACCATCCGTCTGTTCTCATATTGAATTAACGGTTGGGGGGCCAACGAGTCTCATTAAAGGCTGCTGCTCGTCTTGCTTTGATAATTATGTATTGGACGTGGTGAAGAGGGTCATGGACACGAGAACATCGCAGTGGTTACGCTTAGGTCTCTAA 2412 0.4411 MVRGGKVGGRRKPRKRTRSKGGDSDESDEDFVVSEEEKALCEGSEDYSASLDGDASEESCGRFIEEEEEEEEIKQWRKPNKSRRENGVSHQAKVGCRTSRKRGRSAFRGFIEGKDAGDDSDEDYDYEEEDEDEEFSLDEDDSSDEDDEIWVTKRKNDMKTAKQNLQKKIPGRRKKRKRSMASKQPLRKKRRTNCGLRKNVRRDNPVDSVHIVQNARVKSKKTSRRKKSSLASSDSDFAFSESSTYEYTISEEEREQVREAKELCENLRNNSSLPTNVNENGHELQQRKLPARKSKDKMTEPFCRKGKEKIDELKTEVGKQVCGICLSEEDKRRVRGNLNCCTHYFCFACIMEWAKVESRCPLCKQRFQTITKPARSTTGIDLREVVIQVPERDQVYQPSEEELRSYIDPYECVICSECHEGGDDGLMLLCDICDTPAHTFCVGLGREVPQGDWFCFGCRPAQNALLGSSSSSQAEERVRGQRMTSQAAHTQQSPLVNVREGIDLNLLSPPPSSLSQGFSNLSSPRLATRGIQGPSPMSGGGAPTLSGRRWIQRQIQQLLSMDRMNSTVTRMDGLVNANTAGDNLYVSQISRHPTMVQNTRSQDMGTTFRPLPCERVHYNNNSPLERTGDSYLTRTSNIGSQGLQDSFAVTNGSLYGPLWPGLLGMQTVSNEEVHQSNGRWNIATDGFGSPNADAEDNNFHLVQSLVNSHLKKLSHDAGLCQSTLKEITRSCTHTLLAACGLEHKRGEVCAVPAPSVCSHIELTVGGPTSLIKGCCSSCFDNYVLDVVKRVMDTRTSQWLRLGL* 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00162 803 Coils Coil 250 270 - -
Pte13g00162 803 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 306 376 IPR013083 -
Pte13g00162 803 ProSiteProfiles Zinc finger PHD-type profile. 409 461 IPR019787 -
Pte13g00162 803 SUPERFAMILY RING/U-box 316 370 - -
Pte13g00162 803 MobiDBLite consensus disorder prediction 469 494 - -
Pte13g00162 803 Pfam Ring finger domain 321 364 IPR001841 -
Pte13g00162 803 MobiDBLite consensus disorder prediction 509 529 - -
Pte13g00162 803 MobiDBLite consensus disorder prediction 147 162 - -
Pte13g00162 803 MobiDBLite consensus disorder prediction 269 298 - -
Pte13g00162 803 MobiDBLite consensus disorder prediction 1 235 - -
Pte13g00162 803 MobiDBLite consensus disorder prediction 509 545 - -
Pte13g00162 803 MobiDBLite consensus disorder prediction 116 146 - -
Pte13g00162 803 PANTHER F18C1.6 PROTEIN 1 795 - -
Pte13g00162 803 Pfam PHD-finger 412 460 IPR019787 -
Pte13g00162 803 MobiDBLite consensus disorder prediction 1 17 - -
Pte13g00162 803 SMART PHD_3 414 459 IPR001965 -
Pte13g00162 803 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 377 464 IPR013083 -
Pte13g00162 803 SUPERFAMILY FYVE/PHD zinc finger 384 460 IPR011011 -
Pte13g00162 803 CDD RING-HC_Topors 320 367 - -
Pte13g00162 803 MobiDBLite consensus disorder prediction 269 283 - -
Pte13g00162 803 ProSitePatterns Zinc finger RING-type signature. 341 350 IPR017907 -
Pte13g00162 803 MobiDBLite consensus disorder prediction 166 196 - -
Pte13g00162 803 ProSiteProfiles Zinc finger RING-type profile. 322 364 IPR001841 -
Pte13g00162 803 SMART ring_2 322 363 IPR001841 -
Pte13g00162 803 MobiDBLite consensus disorder prediction 71 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00162 Pte-Chr13 1230106 1232801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00162 322 369 C3H Transcription Factor Family AT2G39100 39.583 4.43e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pte13g00162 PHD 2.9e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00162 - - qsa:O6P43_007449 752.281