Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00146 ATGAGTCGCCGCTCCAGGAGCACTATATACGTCGGTAACCTTCCTGGTGATATTCGTTTGCGAGAAGTTGAAGATCTGTTTTACAAGTTTGGCCCTATTGTTGATATTGATCTGAAGATCCCTCCGAGACCACCTGGTTATGCTTTTGTGGAGTTTGAGGATATTCGTGATGCTGAAGAGGCAATTTACCGTCGAGATGCTTATGATTTTGATGGATACCGATTGCGGGTTGAATTTGCTCATGGAGGACGGGGATACTCCTCGTCATCTAATTACTATAGTGGGAGTAGTAGTAGCCGTGGAGCTTCAAGACGTTCTGACTATCGTGTTTTGGTTACTGGTTTACCACATTCTGCCTCGTGGCAAGACCTGAAGGATCACATGCGCAAAGGTGGTGAGGTCTGTTTCTCTCAAGTGTTCCGTGATCGTGGTGGTATGACAGGAATTGTAGATTACACCAACTATGAAGATATGCAGTATGCGCTAAGGAAACTCGATGACTCAGAATTCAGAAATGCTTTCTCACGAGCATATATACGGGTGAGAAAGTATGATTTCAGGAGGAGTTACTCAAGAAGTCCCAGTCGTGATTCAAGGAGAAGTTACTCTAGAAGTATTAGCAGAAGTCCTTACAGGTCTCGCAGTTCTAGCCGCAGTCGTAGTGATAGGAGCCTAAGTGACTCTCCAAATAACAAACACTCACTACGTTCACTATCTCCCTCAAGATCCAGATCAAGGTCCATCTCTCCAGATTCGGCACGCATGCCCAGGAAGAGAGGCAGTCATGGCCGAAGTCCCAGAAGCTTGTCACGTTCCCTATCATCTTCTGGTGGACCTGCAAGAAGCCCCTCTGTTGATTCGCGCGATGGCCATTGA 876 0.4658 MSRRSRSTIYVGNLPGDIRLREVEDLFYKFGPIVDIDLKIPPRPPGYAFVEFEDIRDAEEAIYRRDAYDFDGYRLRVEFAHGGRGYSSSSNYYSGSSSSRGASRRSDYRVLVTGLPHSASWQDLKDHMRKGGEVCFSQVFRDRGGMTGIVDYTNYEDMQYALRKLDDSEFRNAFSRAYIRVRKYDFRRSYSRSPSRDSRRSYSRSISRSPYRSRSSSRSRSDRSLSDSPNNKHSLRSLSPSRSRSRSISPDSARMPRKRGSHGRSPRSLSRSLSSSGGPARSPSVDSRDGH* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00146 291 MobiDBLite consensus disorder prediction 266 282 - -
Pte13g00146 291 SUPERFAMILY RNA-binding domain, RBD 6 176 IPR035979 GO:0003676
Pte13g00146 291 MobiDBLite consensus disorder prediction 188 203 - -
Pte13g00146 291 Gene3D - 2 108 IPR012677 -
Pte13g00146 291 CDD RRM2_SF2_plant_like 108 183 - -
Pte13g00146 291 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 186 IPR000504 GO:0003723
Pte13g00146 291 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Pte13g00146 291 MobiDBLite consensus disorder prediction 230 250 - -
Pte13g00146 291 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 172 IPR000504 GO:0003723
Pte13g00146 291 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Pte13g00146 291 SMART rrm1_1 109 178 IPR000504 GO:0003723
Pte13g00146 291 SMART rrm1_1 8 78 IPR000504 GO:0003723
Pte13g00146 291 Gene3D - 109 185 IPR012677 -
Pte13g00146 291 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 6 275 - -
Pte13g00146 291 MobiDBLite consensus disorder prediction 215 229 - -
Pte13g00146 291 MobiDBLite consensus disorder prediction 188 291 - -
Pte13g00146 291 FunFam serine/arginine-rich splicing factor SR34A-like 108 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00146 Pte-Chr13 1131748 1138105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00146 3 80 Eukaryotic Initiation Factors Gene Family AT3G11400 32.099 2.79e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00146 K12890 - qsa:O6P43_011087 315.849