Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00133 ATGGGCGAATTTCAGCCTAACTCCAAAATCTTCAGCGTTCGAATCGTCTCCATCGACTATTACATGGCTCAACCGATTCCAAGTCTTGATATCTGTCACAGTAGCTTTCAGGGCGGGGATGTAAATGAGGTTCCCGTGATAAGGGTTTACGGTTCTACTCCGGCTGGTCAGAAAACTTGTTTGCACGTACACAGAGCCTTGCCCTATTTATACGTGCCATGTTCAGATATACCACTGACGCCAGGCCCAGAAGTATTCGCACTTTCATTTCATGTTCTGCAGCTCAAGGGCAATGCTGGCCTGAAGAGGCAACATGTACATGGTTGCAGCCTGGTACGAGCAAAGAGATTGTATGGCTACCATTCAGTCGAGGAGTTATTTGTGAAGATATACCTTTATCATCCTCAAGATATTTCTCGGGCTGCAAGTCTACTTCTGAGTGGCGCTGTTCTTGATAAAAGCTTACAACCCCATGAATCGCACATCCCCTTCATCCTCCAATTCATGGTTGACTATAACTTATACGGAATGGGTCATCTCCACCTGTCAAAGATAAAATTTCGTCATCCAATACCTAAGGTTTTTCCCTGTGCAAAACCTAATGCCAATAACCAGGGTACAATGGCAGACTTAGTTGGTGAGTTACACCTGGATTCACAAGTATGGCTGTCTGCCACTACTCCATCTGATTGGTTGTGGCACAATCCTGGGGACTTGGATGCCTCTCCAGATCAGGAACTTCATTGCCCTAAACGCTCAAGTGTATGTGAACTTGAGGGTGATGCTATAGTAGATGGAATTCTTAATCAGAAGTATAAAAATTATTCATCCCTTTCTCAAACCAATTCAAATGTTAAAATGGTCCAGTCACTTATTCCAATTTGGGAGGAGGAGTATGAGAGAACCGGTATGCATGAGGCCCCAACATCTCCGGATCCTTGCAAGCCACTTCCAGAAGATGTTCTAAAATGTTTATCTCTTGGGCTCGAGTTAGGGAGCAAACTTCTTGATTCGTGCAATGATGCTGAGAGCCTCTCATCCTCCTCTATCCCCGAAATTGCACTCAGAGAAACAGACATTATTGGTTCGCAATCACCACCAATTTTGTTGTCTGCGGTAGATGGGAAATCACATATTCAAGGAAGGGTTGCAAGGCCCCAAATGTCAATATCAGATAATTTACAGTCATCTGACATACTTGGAATAACAGACATTAAGGGCACAGATAAGGAAGCTCTTAATCTCCTTAAGTGGCTTGCAACTTCTCAGTCTGCAGAGGATATACACTCTGATGACGAGCTTACTCATGAAATTATTTTGAGTCCTTTGTTACCTTCCCCATCCCTTGATAAAGTTTTAGAGAAAGCCAATATAGATTACGATAATGAATCCCATAAAGAGTGTCAAGACATTCTTGATTCAATTGACAATTTGGTTCCCTCTGAAGCATTGAAGAAGCCTTCTGAACCATTTGATCTCAGTCATCCAGAAGAGGCTTCACCAAAGCAAGTTATTCCTCAAGTTGATGGCGCTGGGGATGATATTGATTCAACTCCATTTTCTGATTCTGTTGGAATGTCATCTGAAATGGATATAATGTCTGAAAATGAAAGGTCTTCTAGACACTATGTGTTACTGGATCCAGGGACCGGCATAACGAAGGATGGAGGGACTAAGTTACGGGGTTCTCTGCCTTTTTCTGCGAACTCAGAGATGAATGATGACAGTGAACATGCCACTTTTACAGAAGCCAATCCAACTGGGGGTGGAACTAGAGATTCTGATAGTCCTAGTTACTTGGCCAGAAATGAAATGGGAAGTGATGGTTTTAGCTTAGAAAAGAACACAGTATCCAGTGCTTGTAATTTAAATGAGATAGGCACATTGGTTAATTGCTCGATCCGTGACTTAATGAGGAAAAAGAGATGTCACCGAAAAGTCAAAGAATGTGAAGTACTCCAAAATAAAAGGGTTTCTTTAGAAAGGGAGAACAAAGAGAATAACTTTAAAGGCACAAACAGTTTTGAACCTCAGCTGAGAATTGATGACCAAGAAATAAAACAATTTAAGTCTTGTGTTACTGAAATCTTCAGTCAAGATACTTCGTTACCAAGTGCATTGCCTTTTCAGTTCATTACTGATAAACTGGCAGTGAAATCCGAATCAAATGTTTTTCAAGATGGAATAACTCATGTGGGTGCTTTGCATACAGATGTCCTTATCTCTGATAGATGTACCCCGGAAGCCATTCCAAATATTAATTTGCAGTGTTTGAAGGCGGATGAGAGCTGTGAACAAATTGTTATTGATTCAAGCTCTGCACCCAGTTGTCCTTTGGAGAAAGAAGTATATGGTAAAGACAATCGGATGTTGGCTTCTTGTGGAAGAATATCTTCAACACAACCTGATCAGGAGAAGGCATATGTTAATGTTTTGGGCACAAGTGGTGCACCGAGCATGTCTGTATCTGATGCTAAACAAGAGACTATTGTACAGGATGGAATAAGCATGGCTTTCAGTGGGTTGAAAAGTCCAGTTTCTTTTCTAGTCAGTGAGGAGGCTAAGTATATGAACTCCATTGGATTTTCAATGTGCAAAAATACCCCTATTGCAGAATTGATCAATGCAAGATCTGACAATGATCCATCTTCTCTTGCTTGTCATAATTCACACAGAGTTTTAAACGAGATAAACCATGATGAAACACCAGGTAAAACCTTGCATGATTTTCTTCCATTTTTCACCTCCAAGTCCCCGGAAGAACGGGAAATTCAAGAAAGATGTGCCGGGAACAATCTTTCTGATTTTCACCAAGGAAATGTTTTGGGTGTTCCATTTCACCGTCAAAATGATGGATCGTTCTTGTACCCTTTGACACCCAAAATCTCACCTCCCCCGGTGGATGGTGTATGCAGGTGGCTTGCTTATGTTGACAAAGGATCTTCTAGCAATTTGATTGCTTCTTCTATGCCTTCTGATTTTGATGAGGATGTACCTGTAAGCAATGATAAATCTCATTTGAGGGTTGATCCGGAAGAAATTTATGATATCAAAGCTGAAGAGAAGCTCTCAAATAACCATATGATGAAGCAAAAACTGAAAAGTGAACAAATAGAGGATGTTAAAGCACCCTCTGATGGCTCACAAGATAATTCCCAGATATCAGGTCATGTTGGGAAATCAAGATCTACTCCTCTCAGTCAAATTGGATTTCGGGACCCTGCAAGTGTTGGATGTGGGCAGCAGCTGACGATTTTAAGTATAGAGGTTCTTGCTGAATCAAGAGGAGACTTGCTTCCTGATCCTCGATATGATGCCATCAATGCTGTAGCTCTTGGTCTTCAGAATGATAGTGACGTAATAATTGATTTTGTTGTGTTATTACGAAGCAGTCTGGAACCCTCTCGGTGGACTTGTGATGGTTCCCTTGCCTGTAAGGTGTCTATGTTCTCTGATGAGAGACATTTACTAGATCAGTTTATCAAGTTCATGTCTTCCTCTGACCCTGATATCTTGATGGGTTGGGATATTCAAGGTGGTTCCCTTGGCTTTTTAGCAGAAAGGGCTTTGCAACTTGGTTTAGGTTTACTCGATAGCATATCCCGCACTCCATCTGTAAATGTTCCAGGAAATACTGAAGCGTCTGAGAAAATCCATTTGCTACGTACAGATGATGATTCATCTGTTAGAAATTGTGTTGTGCAAGATGATGTAATAATTGAAGATGAATGGGGAAGAACGCATGCCAGTGGTGTCCATGTTAGTGGCAGAGTTGTCCTAAATGTGTGGCGACTCATGCGCAGTGAAGTCAAGCTTAATTTATATTCTATTGAAGCTGTATCGGAAACTGTTTTGAGGCGAAAAATTCCTTTTATTCATCACAAGGTGTTGAATTCATGGTTTCAAAGTGGTCCTGGACAAGCAAGATATCGATGTATTGATTATGTTATTGAGAGAGCAAAGCTTAACCTTGAGATTATGAATCAGCTTGATATGATAAATCGCACATCTGAACTCGCTCGTGTCTTTGGTATTGATTTTTTCTCTGTTCTGTCTCGGGGGTCGCAATATCGAGTAGAATCCATGCTTCTGAGATTGGCTCATACCCAAAATTATCTTGCAATCTCTCCTGGAAATCAACAGGTCGCCTCTCAGCCTGCCATGGAGTGCCTGCCTTTGGTGATGGAACCAGAGTCTGGGTTTTATTCCGATCCTGTTATTGTATTGGATTTTCAGTCTTTATACCCTTCGATGATTATTGCCTACAACCTCTGCTTTTCTACATGCCTCGGCAAACTTGTGGCTTCAAAACCTAACACGCTTGGAGTTACTTCCTTTTCACCAGACCCCGGTGTTATGCAGGATCTAAAAACTCAACTCATGTTTACTCCAAATGGTGTTATGTTTGTGCCTTTAAAGGTGCGTAAAGGTGTTCTGCCTCGCTTGTTGGAGGAAATCTTGTCTACTAGAATAATGATGAAACGAGCAATGAAAAAGTTAACTCCTTCACAGCAGGTGCTCCAGCGGATATACAACGCTAGACAGCTCGCATTGAAGTTAATAGCAAATGTAACTTACGGCTACACTGCTGCTGGATTCAGTGGTCGAATGCCCTGTTCGGAGCTTGCGGACAGTATTGTTCAATGTGGCCGTAGTACGCTGGAGAAAGCTATATCATTTGTAAATTCACATGAAAGGTGGAATGCCAAAGTTATATATGGAGATACTGACAGCATGTTTGTTCTCCTCAAAGGACGAACACTTGAAGAATCTTTTCAAATTGGCAATGAGATTGCTGCTGCTATTACTGCTATGAATCCCAGTCCTGTCGCGCTGAAAATGGAAAAAGTATATTGCCCATGCTTCCTTCTAACTAAGAAGCGGTATGTCGGTTATAGTTATGAGGGTCCAGAGCAAACAGTACCTGTATTTGATGCAAAAGGTATTGAGACAGTTCGGAGGGACACATGTGGTGCAGTTGCAAAGTTGATGGAGCGGTCTTTGAGAATCTTCTTTGAACATCAAGATATATCTAAGGTGAAAACTTTCTTGGAACGACAGTGGAAGAAGATTCTTTCGGGTCGGATCTCTCTCCAAGATTTTGTTTTTGCAAAGGAGGTTCGACTTGGTACCTACAGTTCCAGGGCTTCCTCTCTTCCCCCCGCTGCTATTGTGGCCATCAAAGCAACGAGGAGGGATCCTAGAGCAGAACCACGCTATGCTGAGAGAATAGCTTATGTTGTAATCCATGGGGAGCCTGGAGCCCGACTGGTTGATTTGGTTGTGGATCCATTGGAGCTTCTAGAAATGGACTCTCCATTCAGAATGAATGATTTATACTACATCCATAAACAAATTATTCCGGCTTTGCAGAGGGTTTTTGGACTTGTTTGTGCCGACTTGAACCTGTGGTTTCTAGAAATGCCTCGTCCTGCAAGAGAAACTATTGGAAAGCGTCCATTTTTCGCACCAAATCAACCAAGAACTAGAATAGATTATTATTATCTCTCGAAACATTGTGTACTTTGTGGGGGATTGGTCCAGGCATCAGCCCATATTTGTGATCCATGTTCACAAAACGAGATCGCTGCTGCAACTACCTTGATCGTTAGAACCTCTAAGTTAGAACGAGAGATGCAACACCTCGTAGAGATATGCCGCCATTGTGGTGGTGGAGATTGGGTACCGGAAAGTGGTGTAAAATGCATTTCCATTGCATGTTCGATGTTCTATGAGAGGCGGAAAGTTCAGAAAGAATTGCAAGCCCTTAGTAATGTGGCTGCCAACAACGGGCTCTATCCGAGATGTATGGCCGAGTGGTTTTGA 5826 0.4207 MGEFQPNSKIFSVRIVSIDYYMAQPIPSLDICHSSFQGGDVNEVPVIRVYGSTPAGQKTCLHVHRALPYLYVPCSDIPLTPGPEVFALSFHVLQLKGNAGLKRQHVHGCSLVRAKRLYGYHSVEELFVKIYLYHPQDISRAASLLLSGAVLDKSLQPHESHIPFILQFMVDYNLYGMGHLHLSKIKFRHPIPKVFPCAKPNANNQGTMADLVGELHLDSQVWLSATTPSDWLWHNPGDLDASPDQELHCPKRSSVCELEGDAIVDGILNQKYKNYSSLSQTNSNVKMVQSLIPIWEEEYERTGMHEAPTSPDPCKPLPEDVLKCLSLGLELGSKLLDSCNDAESLSSSSIPEIALRETDIIGSQSPPILLSAVDGKSHIQGRVARPQMSISDNLQSSDILGITDIKGTDKEALNLLKWLATSQSAEDIHSDDELTHEIILSPLLPSPSLDKVLEKANIDYDNESHKECQDILDSIDNLVPSEALKKPSEPFDLSHPEEASPKQVIPQVDGAGDDIDSTPFSDSVGMSSEMDIMSENERSSRHYVLLDPGTGITKDGGTKLRGSLPFSANSEMNDDSEHATFTEANPTGGGTRDSDSPSYLARNEMGSDGFSLEKNTVSSACNLNEIGTLVNCSIRDLMRKKRCHRKVKECEVLQNKRVSLERENKENNFKGTNSFEPQLRIDDQEIKQFKSCVTEIFSQDTSLPSALPFQFITDKLAVKSESNVFQDGITHVGALHTDVLISDRCTPEAIPNINLQCLKADESCEQIVIDSSSAPSCPLEKEVYGKDNRMLASCGRISSTQPDQEKAYVNVLGTSGAPSMSVSDAKQETIVQDGISMAFSGLKSPVSFLVSEEAKYMNSIGFSMCKNTPIAELINARSDNDPSSLACHNSHRVLNEINHDETPGKTLHDFLPFFTSKSPEEREIQERCAGNNLSDFHQGNVLGVPFHRQNDGSFLYPLTPKISPPPVDGVCRWLAYVDKGSSSNLIASSMPSDFDEDVPVSNDKSHLRVDPEEIYDIKAEEKLSNNHMMKQKLKSEQIEDVKAPSDGSQDNSQISGHVGKSRSTPLSQIGFRDPASVGCGQQLTILSIEVLAESRGDLLPDPRYDAINAVALGLQNDSDVIIDFVVLLRSSLEPSRWTCDGSLACKVSMFSDERHLLDQFIKFMSSSDPDILMGWDIQGGSLGFLAERALQLGLGLLDSISRTPSVNVPGNTEASEKIHLLRTDDDSSVRNCVVQDDVIIEDEWGRTHASGVHVSGRVVLNVWRLMRSEVKLNLYSIEAVSETVLRRKIPFIHHKVLNSWFQSGPGQARYRCIDYVIERAKLNLEIMNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAISPGNQQVASQPAMECLPLVMEPESGFYSDPVIVLDFQSLYPSMIIAYNLCFSTCLGKLVASKPNTLGVTSFSPDPGVMQDLKTQLMFTPNGVMFVPLKVRKGVLPRLLEEILSTRIMMKRAMKKLTPSQQVLQRIYNARQLALKLIANVTYGYTAAGFSGRMPCSELADSIVQCGRSTLEKAISFVNSHERWNAKVIYGDTDSMFVLLKGRTLEESFQIGNEIAAAITAMNPSPVALKMEKVYCPCFLLTKKRYVGYSYEGPEQTVPVFDAKGIETVRRDTCGAVAKLMERSLRIFFEHQDISKVKTFLERQWKKILSGRISLQDFVFAKEVRLGTYSSRASSLPPAAIVAIKATRRDPRAEPRYAERIAYVVIHGEPGARLVDLVVDPLELLEMDSPFRMNDLYYIHKQIIPALQRVFGLVCADLNLWFLEMPRPARETIGKRPFFAPNQPRTRIDYYYLSKHCVLCGGLVQASAHICDPCSQNEIAAATTLIVRTSKLEREMQHLVEICRHCGGGDWVPESGVKCISIACSMFYERRKVQKELQALSNVAANNGLYPRCMAEWF* 1942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00133 1941 SUPERFAMILY DNA/RNA polymerases 1354 1810 IPR043502 -
Pte13g00133 1941 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 6 1933 IPR030559 GO:0006281|GO:0016035|GO:0019985
Pte13g00133 1941 FunFam DNA polymerase 1090 1389 - -
Pte13g00133 1941 Gene3D - 1116 1389 IPR036397 GO:0003676
Pte13g00133 1941 Gene3D Palm domain of DNA polymerase 1392 1637 IPR023211 -
Pte13g00133 1941 SMART polmehr3 1081 1585 IPR006172 GO:0000166|GO:0003676|GO:0003887
Pte13g00133 1941 MobiDBLite consensus disorder prediction 988 1007 - -
Pte13g00133 1941 Coils Coil 643 663 - -
Pte13g00133 1941 PRINTS DNA-directed DNA-polymerase family B signature 1571 1579 IPR006172 GO:0000166|GO:0003676|GO:0003887
Pte13g00133 1941 PRINTS DNA-directed DNA-polymerase family B signature 1406 1419 IPR006172 GO:0000166|GO:0003676|GO:0003887
Pte13g00133 1941 PRINTS DNA-directed DNA-polymerase family B signature 1515 1527 IPR006172 GO:0000166|GO:0003676|GO:0003887
Pte13g00133 1941 CDD POLBc_zeta 1354 1802 - -
Pte13g00133 1941 Pfam DNA polymerase family B 1347 1794 IPR006134 GO:0000166|GO:0003677
Pte13g00133 1941 Gene3D - 1648 1803 IPR042087 -
Pte13g00133 1941 FunFam DNA polymerase 1648 1816 - -
Pte13g00133 1941 FunFam DNA polymerase 30 189 - -
Pte13g00133 1941 Pfam DNA polymerase family B, exonuclease domain 55 184 IPR006133 -
Pte13g00133 1941 Pfam DNA polymerase family B, exonuclease domain 1081 1280 IPR006133 -
Pte13g00133 1941 Gene3D Helix hairpin bin 1473 1532 - -
Pte13g00133 1941 ProSitePatterns DNA polymerase family B signature. 1573 1581 IPR017964 GO:0000166|GO:0003676
Pte13g00133 1941 Gene3D DNA Polymerase, chain B, domain 1 30 189 - -
Pte13g00133 1941 Pfam C4-type zinc-finger of DNA polymerase delta 1840 1913 IPR025687 -
Pte13g00133 1941 MobiDBLite consensus disorder prediction 1044 1065 - -
Pte13g00133 1941 FunFam DNA polymerase zeta 1473 1532 - -
Pte13g00133 1941 MobiDBLite consensus disorder prediction 567 601 - -
Pte13g00133 1941 MobiDBLite consensus disorder prediction 567 606 - -
Pte13g00133 1941 MobiDBLite consensus disorder prediction 1040 1065 - -
Pte13g00133 1941 CDD DNA_polB_zeta_exo 1080 1328 - -
Pte13g00133 1941 SUPERFAMILY Ribonuclease H-like 36 1353 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00133 Pte-Chr13 1028137 1040856 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00133 1085 1920 Core DNA Replication Machinery Family AT5G63960 28.817 5.39e-86 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00133 K02350 - qsa:O6P43_011109 2170.59