Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00117 ATGGAGAAAGATAAGCAGGCGAGCAAGTATAGCATGTCGCCGTTATCTTTGAACAGGTCGAACCCGGATCCGGAACCGGATGAGGAGGAGTCTGTTTCTTCATGCCCCATATGTCTCGGACCCATCGTTCAAGATTCATACCTTGAAAAATGTCTGCACAAGTTTTGTTTTAATTGCATCATGCAATGGACTAAGGTGGTAGCCGGAAAGCACCGTGGCCCTGCCTCCTCTTCTGTAAAATGCCCCCTATGCAAGGCAGATAACATATTTATTGTTCATGAATTGGATGGAAGTGTTCTTCAACGGTATTATGTCAATGAGGACATTGAGAACAGTTTTGTCTTATCAAGAGAGCAAAGATATAGATTACAATGTTATTACACTGAACCAGGTAACTTAGATGATATATTTAATATATCAAGGTATTGGAAATCTCGTAAATACTGTCAGCCGAACCGTTGGCTTCAAAATTGGTTGAAAAGGGAAATTCAGGCCCTCGTACAGGAGGAAGATGTGGAAGTCTTAGTACACCATATCCGTGGTGTGATCAGTTCATACTTAAGCAGTTGTCAGAAGTCTCCAGCAAAATCAGCTGAAACAATAGAACAAGAGTTCAAGAATCTAGTCTCCCAAGCAGCAGGGCCTTTTCTCGTGGCAAGAACAGAGAGATTTGTATATGAAATGGAACTATTTCTTGCTTCGGAATTGAATATGGAAGCCTATGATGCTGTTTTCATGCAACGATTAGGTTGGAGTTCATCTCCAGTCACGTCTGAAACATCTGAAAGGGAACTCGCCCAGTGCGCAACTGTGGTTCCTTTCTTGTATATATACGACGAGGACTCGAATTAA 852 0.4202 MEKDKQASKYSMSPLSLNRSNPDPEPDEEESVSSCPICLGPIVQDSYLEKCLHKFCFNCIMQWTKVVAGKHRGPASSSVKCPLCKADNIFIVHELDGSVLQRYYVNEDIENSFVLSREQRYRLQCYYTEPGNLDDIFNISRYWKSRKYCQPNRWLQNWLKREIQALVQEEDVEVLVHHIRGVISSYLSSCQKSPAKSAETIEQEFKNLVSQAAGPFLVARTERFVYEMELFLASELNMEAYDAVFMQRLGWSSSPVTSETSERELAQCATVVPFLYIYDEDSN* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00117 283 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 114 IPR013083 -
Pte13g00117 283 MobiDBLite consensus disorder prediction 1 32 - -
Pte13g00117 283 Pfam Zinc finger, C3HC4 type (RING finger) 35 84 IPR018957 GO:0046872
Pte13g00117 283 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 26 245 - -
Pte13g00117 283 SMART ring_2 35 84 IPR001841 -
Pte13g00117 283 ProSiteProfiles Zinc finger RING-type profile. 35 85 IPR001841 -
Pte13g00117 283 ProSitePatterns Zinc finger RING-type signature. 51 60 IPR017907 -
Pte13g00117 283 SUPERFAMILY RING/U-box 29 92 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00117 27 162 C3H Transcription Factor Family AT2G42030 27.972 1.88e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00117 - - qsa:O6P43_007532 358.221