Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00109 ATGAGCTTCCAGTCCGAGAAGCCGGTTCCAGACAAGAAACATGGATTCGGTCTTTTACATGGGTTCCTGGCCGTGTTCTTGTTGGAGATACCTCTATCAATGGCCCAACCGAGCTCCAACGATCAACAAGAGCAATCCCCATATCAGAAACTAAGTCCACAAATGGCGATCATAATAGTGATCTTGCTCGCAGCGCTTTTCTTAATGGGTTTCTTCTCTCTCTACATCCGCCGCTGCTCTGACGCAGCCTCTGGCGGTAATGTTAGGGCAAATGTTGGTCAGGTTCTCGGCCGATCAAGAAGGTTGACTCGAGGACTTGATGCAGAGGTAATCAATTCATTTCCGACACTGGAGTACTCGGAGGTCAAAGAGCACCAGATTGGAAAAGGAGCTCTTGAATGCGCCGTGTGTCTCTGCGAGTTTGAAGATGGTGAAACGTTGCGTTTCATTCCCAAATGTGACCACGTCTTTCACTCTGACTGTATCGATGCGTGGCTGGCTTCACACACAACCTGCCCGGTTTGCAGAGCTAACTTGGTTCCTCAACCCGGCGAGTCCATACATGGGATCCCGCAGTTGCACACAGAACCGGATGTTGAAGCCCAAAGCCCTACGGAGGCGGCAACTGAAGTAGACGAGGAGGAGGTTACTGGGAGACCAGCGACCGAGGAACCCGAAACGGCATCGGTGGTTGGGTGGTTGAGTAAGACGTTGAGTCGGAACCGCACGCGGAGGTCTCGGTCCCACCGGCAACGCAAGTTCTTACGGTCGCACACGACCGGGCATTCTGTAGTTCAACCTGGTGAAAGTATTGATCGGTTTACACTCAGATTACCGGTTGAAGTCAGAAAGCAGATATTGAACCGGGAGTTGCATAGAGCATCAAGCGTGGTGGTGTTGCCTCGTGAAGGAAGTACGAGGAGAGGATATCGATCCGGTAGTGTAGGAAGTAGTAGTAGAGGGAAGTTCTACCAGCGGCTTGAGAAGTTGGACCCGGGTTTTAAATTGGACCGGTGGGTGTTTTCTAAGGCACCTCCATTTTTAACGAGAGCTTCATCGTCCGGGCAGTCTGCAAACATGGGTACACGCGAGAATGAAGAAAACATGGAAACACCTATTGCACACCCACATACTGATTCTGCTCGACCTCCAATATAG 1158 0.5104 MSFQSEKPVPDKKHGFGLLHGFLAVFLLEIPLSMAQPSSNDQQEQSPYQKLSPQMAIIIVILLAALFLMGFFSLYIRRCSDAASGGNVRANVGQVLGRSRRLTRGLDAEVINSFPTLEYSEVKEHQIGKGALECAVCLCEFEDGETLRFIPKCDHVFHSDCIDAWLASHTTCPVCRANLVPQPGESIHGIPQLHTEPDVEAQSPTEAATEVDEEEVTGRPATEEPETASVVGWLSKTLSRNRTRRSRSHRQRKFLRSHTTGHSVVQPGESIDRFTLRLPVEVRKQILNRELHRASSVVVLPREGSTRRGYRSGSVGSSSRGKFYQRLEKLDPGFKLDRWVFSKAPPFLTRASSSGQSANMGTRENEENMETPIAHPHTDSARPPI* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00109 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 181 IPR013083 -
Pte13g00109 385 PANTHER RING FINGER DOMAIN-CONTAINING 36 185 - -
Pte13g00109 385 Pfam Ring finger domain 133 176 IPR001841 -
Pte13g00109 385 MobiDBLite consensus disorder prediction 186 266 - -
Pte13g00109 385 SUPERFAMILY RING/U-box 113 183 - -
Pte13g00109 385 CDD RING-H2_EL5-like 133 176 - -
Pte13g00109 385 FunFam E3 ubiquitin-protein ligase ATL6 94 182 - -
Pte13g00109 385 MobiDBLite consensus disorder prediction 350 385 - -
Pte13g00109 385 ProSiteProfiles Zinc finger RING-type profile. 134 176 IPR001841 -
Pte13g00109 385 MobiDBLite consensus disorder prediction 350 366 - -
Pte13g00109 385 SMART ring_2 134 175 IPR001841 -
Pte13g00109 385 MobiDBLite consensus disorder prediction 240 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00109 Pte-Chr13 900571 902388 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00109 25 355 Rapid Response to Elicitors AT3G05200 45.697 1.52e-84 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00109 K10664 - qsa:O6P43_007546 345.51