Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00108 ATGGCCCTAGAAGCTGTGGTACATCCCCAAAATTCTTTTGGTTATGCTATCAATAATGACTTGTACAATTTGTTAGGTGGTGGAGGGAGCTGGAGCTACCAAGAATTCAACCTGCAAGAAACGGAGGATGGCCAAGTTTGTAGTGATTTTCTCAATGACCAAACAGAAAATTATCCCTATGGGGAGTGCGATTTTTCTCCTTCATCAATAATACCATACTTGAATGGTGTCAACTTGTCCTATGCAAGTTATGACTCAGTCAATCCCGATGGCAACAACCAAACTACAAGCTGCGACCTCTCAAACTTGGATGCCAGCACTGCAGCCATCCCAGCTGCTCGTTCTAGGAGACGCCGAGCAAGAAGCCGAAAGAACAAGGAAGAGATTGAGAATCAAAGAATGACTCACATTGCTGTAGAGCGCAACCGAAGAAAGCAAATGAATGAGTACCTATCAGTTCTTCGCTCGTTAATGCCCGAGTCTTACGTTCAAAGGAATGACCAAGCTTCTATTATTGGAGGTGCCATTAACTTTGTGAAAGAGCTAGAACAGAGTCTGCAATTTCTTGTTGCTCAGAAAGAGAGAGATGATGGGAAATCTCATAGAGGTCAATCCATACCATTTTCTGAGTTCTTTGCCCGTCCTCAGTATTCAACAAATCCAAGTGCTGCATGTGATAACCCTTCTGCCATGGGTGAAAAGGTGGGCCAAGTTGGGTCTACATCAGTTGCTGACATCGAAGTAACAATGATGGAGAGTCATGCAAATCTGAAGATAAGATTGACAAGGAGACCAAAGCAACTAGTGAAGATAGTCTCAGGCTTGCATAGTTTACGTCTCACAGTGCTGCACCTAAATCTCACGACCAGCAATGATACTGTTCTCTATTCTCTCACTCTTAAGGTAGAGGGTGACGCAAAACTGGGTTCAGCGGATGAGATTGCTGCAGTTGTATACAAATTGTTGGATCAAGATATCAAATCTCACTAA 990 0.4333 MALEAVVHPQNSFGYAINNDLYNLLGGGGSWSYQEFNLQETEDGQVCSDFLNDQTENYPYGECDFSPSSIIPYLNGVNLSYASYDSVNPDGNNQTTSCDLSNLDASTAAIPAARSRRRRARSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPESYVQRNDQASIIGGAINFVKELEQSLQFLVAQKERDDGKSHRGQSIPFSEFFARPQYSTNPSAACDNPSAMGEKVGQVGSTSVADIEVTMMESHANLKIRLTRRPKQLVKIVSGLHSLRLTVLHLNLTTSNDTVLYSLTLKVEGDAKLGSADEIAAVVYKLLDQDIKSH* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00108 329 CDD bHLH_AtFAMA_like 134 196 - -
Pte13g00108 329 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 131 195 IPR036638 GO:0046983
Pte13g00108 329 Gene3D - 121 205 IPR036638 GO:0046983
Pte13g00108 329 Pfam Helix-loop-helix DNA-binding domain 132 183 IPR011598 GO:0046983
Pte13g00108 329 SMART finulus 137 188 IPR011598 GO:0046983
Pte13g00108 329 Coils Coil 112 132 - -
Pte13g00108 329 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 131 182 IPR011598 GO:0046983
Pte13g00108 329 PANTHER MAX DIMERIZATION, MAD 69 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00108 Pte-Chr13 885344 886922 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00108 1 302 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 45.152 4.18e-71 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte13g00108 HLH 2.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00108 - - gmx:100777413 346.665