Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00071 ATGTTTGATGAAACTTCATCAAACCAGCTGCACCAAGTAGCCTCATCAATAACTTCACTCCCTCTTCACTTACCCTTCCCACCCGATGCCTCCATTACACAAAACATGAACACTTTCCCTCCTCTCCATCCTAATTATAATCCTTCTCGTCATTTGTTTCCCCAGCTACCACCAATTTCTTTGCACGCATTGCACCACCAATCTTCCACCCACGATGATGAACAAGATAAACAAAATACTGCCATGGTATCCATGAGCCTCGCTGTGGACAGTCAAAGACAAACTCCTGACCTTACTCAGCTTATGGCCGATGATAGCTCTTGGAGTCATGATGAAATACTTGCGCTGTTAAGGATCAGATCTAGCATGGAGAATTGGTTCTCTGACTTCACCTGGGAACATGTCTCAAGGAAGCTATTACAGCTTGGGTTTAAGAGGAGTGCTGAGAAATGCAAGGACAAGTTTGAAGAGGAAAGCAGATACTTCAATGCCAACATTAATTACCACAAGAACTGCAGGTTCGTGACTGAGTTTGAAGAGCTGTATCATGCTGATCAGCAAAACCTGGAACATTTGGCAGAAAAAATCCCGCGGCTGCCAGAAAAGACATGTGAAGGACAAGACCAAATGGATCAGAATTCAGAAGAACATTCAGGAAACGACTTAGTTGGGAAACCACGTGAACGCATTCCTGCTGAGCAAGCAGTGAAGAGGAAGAGATCTTCAGTTGACAACAAGTTTGAGATGTTTAAGGGCTTTTGTGAGAACATTGTGAACAACATTATGGCTCAGCAAGAAGAAATGCATAAAAAGCTCATTGAAGACATGGTGAAAAGAGATGAGGAGAAGATTGCCAGAGAAGAAGCTTGGAAGAAGCAAGAAATGGACAAGATGAACAAGGAACTAGAAATTATGGCACATGAACAGGCTGTAGCTGGCGATAGGCAAGCGACAATCATTGAATTCCTGAAAAAGTTTGCAGTGACTTCTCCCGAAACTTCAAACGACAATGATCATGCCCATGTACCTAACAGTGCGAATCCCAATAGAGCTCCTACCACTTCTTTAATGCACTTGGATTATCCTATTTCTCACACTGATCATCAAAATAATCCTGGACCACGATCGGGTCCATGTCAGCAAAATCTTCGTGCTTCCTCTGATCAAAACGTTCAAATAATTAAACCCATTTCTTCAACTGAGAAACTAGCTACAGATAACCCTAACCATCCACCAGGTATCAGTACTCCACGAACTTGCAAAGAACTGCATTCTTCGTTAACTATAAACCCATATCTCAACAACACTGGGCAAGACACCACATTAACAACTGGCTCAATCCCCACAAGAAGAGGTCCCTCGAACGCCACCCCCTTCACAGAGAAGGACGACTTTGGAAGAAGATGGCCCAAGGATGAAGTTCTAGCACTAGTAAACCTCAGATTCAGTCTGAACAACAATGCTGCTGAAGACAAGGAGGGAACTAGAGCTCCCTTGTGGGAGAAAATCTCACAACGGATGATGGAGTTGGGTTACCAGAGGAGTTCAAAGCGATGCAAAGAGAAATGGGAGAACATAAACAAGTACTTCAGGAAGACCAAGAATATTCACAAGAAAAGGTCTCTTGACTCTAGGACTTGTCCTTATTTTCATACATTGAGTGCTATGTACAATCAAGGAAAGCTGATCTCTCAAACTGAAATGGCCGTGGACAACCACTTGGTGACTTCGCCTTCAGACCACCGGCTAGATGAGCTGCATAACCATCACGATGTCTCCAATATTATCAGTCCTGTCCATGAAGCTGATAATAAAAACTCGGGTCATGCACCTCCTTTTGATTATGAGTTGTAA 1854 0.4326 MFDETSSNQLHQVASSITSLPLHLPFPPDASITQNMNTFPPLHPNYNPSRHLFPQLPPISLHALHHQSSTHDDEQDKQNTAMVSMSLAVDSQRQTPDLTQLMADDSSWSHDEILALLRIRSSMENWFSDFTWEHVSRKLLQLGFKRSAEKCKDKFEEESRYFNANINYHKNCRFVTEFEELYHADQQNLEHLAEKIPRLPEKTCEGQDQMDQNSEEHSGNDLVGKPRERIPAEQAVKRKRSSVDNKFEMFKGFCENIVNNIMAQQEEMHKKLIEDMVKRDEEKIAREEAWKKQEMDKMNKELEIMAHEQAVAGDRQATIIEFLKKFAVTSPETSNDNDHAHVPNSANPNRAPTTSLMHLDYPISHTDHQNNPGPRSGPCQQNLRASSDQNVQIIKPISSTEKLATDNPNHPPGISTPRTCKELHSSLTINPYLNNTGQDTTLTTGSIPTRRGPSNATPFTEKDDFGRRWPKDEVLALVNLRFSLNNNAAEDKEGTRAPLWEKISQRMMELGYQRSSKRCKEKWENINKYFRKTKNIHKKRSLDSRTCPYFHTLSAMYNQGKLISQTEMAVDNHLVTSPSDHRLDELHNHHDVSNIISPVHEADNKNSGHAPPFDYEL* 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00071 617 CDD GT1 467 534 - -
Pte13g00071 617 MobiDBLite consensus disorder prediction 364 383 - -
Pte13g00071 617 ProSiteProfiles Myb-like domain profile. 106 159 IPR001005 -
Pte13g00071 617 MobiDBLite consensus disorder prediction 331 354 - -
Pte13g00071 617 PANTHER FI21293P1 69 601 - -
Pte13g00071 617 FunFam Trihelix transcription factor GT-2 469 532 - -
Pte13g00071 617 MobiDBLite consensus disorder prediction 331 383 - -
Pte13g00071 617 SMART sant 104 161 IPR001005 -
Pte13g00071 617 SMART sant 465 529 IPR001005 -
Pte13g00071 617 Gene3D - 108 163 - -
Pte13g00071 617 Gene3D - 469 532 - -
Pte13g00071 617 MobiDBLite consensus disorder prediction 598 617 - -
Pte13g00071 617 Pfam Myb/SANT-like DNA-binding domain 467 555 IPR044822 -
Pte13g00071 617 Pfam Myb/SANT-like DNA-binding domain 106 174 IPR044822 -
Pte13g00071 617 MobiDBLite consensus disorder prediction 431 456 - -
Pte13g00071 617 ProSiteProfiles Myb-like domain profile. 468 527 IPR001005 -
Pte13g00071 617 MobiDBLite consensus disorder prediction 431 465 - -
Pte13g00071 617 CDD GT1 106 163 - -
Pte13g00071 617 MobiDBLite consensus disorder prediction 204 228 - -
Pte13g00071 617 FunFam Trihelix transcription factor GT-2 108 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00071 Pte-Chr13 635756 638078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00071 108 559 Trihelix Transcription Factor Family AT5G28300 38.150 1.56e-90 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pte13g00071 Myb_DNA-bind_4 1.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00071 - - qlo:115981744 503.827