Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00058 ATGAACACTGAGAAAGATTTGAACTTGGATGAAACAGAGCTGCGGCTAGGACTACCAGGAACACATGAAGACACCTTGAAAAGTGTTAGAAACAACAAAAGGCACCTGTCAGACGCACATCGAATATTCAATTCCAACAGCAATGCGGAGGAAAGTGACAAAGGAAGTTCTCCGCCTTCCAAGGCACAAGTGGTGGGGTGGCCACCAGTTCGATCTTTCCGGAGAAACCAGCTCCAACAAAAGAAAGAAGCAGAATGCGCTTATGTAAAAGTAAGCATGGACGGGGCTCCCTATCTTAGGAAAATTCAGTTGAAGGTCTACGAGGGATATCCACAACTTCTAAAAGCCCTGGAAGACATGTTTCAATTCAAAGCTGGTCAATATTCTGAAAAAGAAGGATACAATGGGTCAGAATATGTTCCCACTTATGAAGACAAAGATGGAGATTGGATGTTAATTGGAGACGTCCCATGGGAGATGTTTACCACTTCTTGCAGAAGGATGAGAGTGATGAAGGAATCAGAAGCCAAAGGCTTGGGTTGTGCCTTGTGA 552 0.442 MNTEKDLNLDETELRLGLPGTHEDTLKSVRNNKRHLSDAHRIFNSNSNAEESDKGSSPPSKAQVVGWPPVRSFRRNQLQQKKEAECAYVKVSMDGAPYLRKIQLKVYEGYPQLLKALEDMFQFKAGQYSEKEGYNGSEYVPTYEDKDGDWMLIGDVPWEMFTTSCRRMRVMKESEAKGLGCAL* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00058 183 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 177 IPR003311 GO:0005634|GO:0006355
Pte13g00058 183 MobiDBLite consensus disorder prediction 21 40 - -
Pte13g00058 183 FunFam Auxin-responsive protein 81 183 - -
Pte13g00058 183 Gene3D - 80 183 - -
Pte13g00058 183 MobiDBLite consensus disorder prediction 41 59 - -
Pte13g00058 183 MobiDBLite consensus disorder prediction 21 66 - -
Pte13g00058 183 SUPERFAMILY CAD & PB1 domains 86 172 - -
Pte13g00058 183 Pfam AUX/IAA family 35 180 IPR033389 -
Pte13g00058 183 ProSiteProfiles PB1 domain profile. 86 173 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00058 Pte-Chr13 553061 554474 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00058 77 179 B3 DNA Binding Superfamily AT4G23980 30.769 1.91e-09 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pte13g00058 AUX_IAA 3.7e-54 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00058 K14484 - tcc:18600189 262.307