Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00057 ATGACAAGCGCCGTGGAAACTGAGCCAGATCGATACGTAATGATTAATTTTGAGGAGACAGAGTTGCGGTTGGGTTTGCCTGGTGGGGCTATTGGAAAAGATCATGGGGATGAATCAAAGATGGAAACTCCTCGTGCTGCTGCTAGTAGTGTTTCAACAACCATGGCTGGTAACGGGAAGAGAGGGTTTTCTGAGGCTGTTGATTTGAAGCTCAATCTCTCTTCGTCTAAGGATCCGGTTTCACGTGATATTGTTGGAGACAATGCTCCAGAGAAGACTGCTGCCGGCGCCCCACGGTCTAATGATCCCGCTAAACCACCTGCAAAGGCACAAGTTGTTGGTTGGCCACCCGTGCGATCTTGCAGAAAGAATCTAGTGGCAGTGCAAAAACCAAACGGAGATAGTGAAGCGCAGAAAGGTAGTAGCAGTGCTGCCTTTGTTAAAGTGAGCGTGGATGGTGCGCCATATTTGCGCAAGGTGGACTTGAAGCTGTACAAGAGCTACCAAGAACTCTGTGATGCCCTAGCCAAAATGTTCAGCTCCTTCACCATGGGTAATTGCGGGTCAGAAGGAATGAAGGATTTAATGAATGAAGGGAAGCTGGTTGATCTTTTAAATGGATCTGACTATGTACCAACATATGAAGACAAGGATGGAGACTGGATGCTGGTTGGTGATGTGCCCTGGGAGATGTTCGTTCGTTCTTGCAAGCGCTTGCGAATCATGAAAGGATCGGAGGCAGTTGGACTGGGTGAGTCTTCTTGA 765 0.4824 MTSAVETEPDRYVMINFEETELRLGLPGGAIGKDHGDESKMETPRAAASSVSTTMAGNGKRGFSEAVDLKLNLSSSKDPVSRDIVGDNAPEKTAAGAPRSNDPAKPPAKAQVVGWPPVRSCRKNLVAVQKPNGDSEAQKGSSSAAFVKVSVDGAPYLRKVDLKLYKSYQELCDALAKMFSSFTMGNCGSEGMKDLMNEGKLVDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVRSCKRLRIMKGSEAVGLGESS* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00057 254 MobiDBLite consensus disorder prediction 77 114 - -
Pte13g00057 254 Gene3D - 138 253 - -
Pte13g00057 254 MobiDBLite consensus disorder prediction 26 60 - -
Pte13g00057 254 MobiDBLite consensus disorder prediction 45 59 - -
Pte13g00057 254 ProSiteProfiles PB1 domain profile. 144 244 IPR000270 GO:0005515
Pte13g00057 254 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 16 249 IPR003311 GO:0005634|GO:0006355
Pte13g00057 254 FunFam Auxin-responsive protein 139 254 - -
Pte13g00057 254 Pfam AUX/IAA family 19 251 IPR033389 -
Pte13g00057 254 SUPERFAMILY CAD & PB1 domains 138 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00057 Pte-Chr13 542379 544555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00057 100 247 B3 DNA Binding Superfamily AT3G61830 30.405 6.27e-11 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pte13g00057 AUX_IAA 8.7e-83 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00057 K14484 - rcu:8269330 330.487