Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00055 ATGGCTAACCAGGTGGTCAAAGTTAAGAGGGAGACGCTGGAAGCATGCATGACATGCCCTCTCTGTAATAAGCTCTTAAAAGAGGCTACTACCCTATCTCTCTGCCTTCATACCTTCTGCAGGAAGTGCATATATGAGAAGCTCTCAGACGAAGAGGTTGATTGCTGCCCGGTATGCAATATTGATCTAGGTGTTCTTCCTGTGGAAAAGCTCAGGCCTGACCACAATTTGCAAGACATAAGGGCAAAAATATTCCCTTTTAAAAGACGAAAGGTCAGGGCTCCTAAAGTTTTGCCTTCAGTATCACTGCCTGCTAAAAGGAAAGAAAGATCACTTTCATCCTTGGTTGTAAGTGCTCCCAAAGTTTCAGTGCAAACTGGTTTCACTGGAAGGAGAACAAAAACTGGAGCAAGAAAAGCCGGTGCCATACGTGGATGTAGCTTCACCTTTGAAGGACCCATAAAGAAAGAGGATACTTTTGTTGAGGATAATCCGCTGAGCTCAACCTCACCTGATTCGTCAAGTAAAAGTCAATGTACTACATTAGCTGAGTCTTCCAGAAAGCATAGGAACACTGAAGATAATGAAGATACTGTTAGAAGTAAAGAGGGGAAGGTTGATCTGTGGACACCCTTGAACTGTCTCGTTGAGGCTGCAAACAGGACCAAGTCCTCTAAATTTAACCCACCCGGAAATTCTATTGCAAAATCAGAGTCACCAAATGTCAACCGCGGTGATGCAGATATGCCTGAGGTTGAAGGCAAAGATAAATTTTCCCCTCCATCCCGCCTTATACTTAAATCCAAAATCAAAGATAACGGACATAAAATAAAATTGGAAGATGACAAGAATGAGATGGCCTTAGTTCCAGGGCCAGTGAAGCGCCGAAGGCTGCGCCCTGCAAATCATAAAAGATCCAGAGAATCTGAAATGTCCACTTCAACTCATGTCATGCTAGATTTGCCGGGAACTAGGTCTAACAGGAAAATGGGTCCTATCTGGTTCTCGTTAGTTGCTTCTGAGGATCAGAAAGCAGATGTCCCCTTGCCACAAATTTCTTCTTGTTACTTGAGAATAAAGGATGGTAGTGTTCCTGTATCTTCTATTCAGAAGTATCTTGTCAAGAAACTTGATCTTGCCAGTGAAGCAGAGGTGGAGATCATGTGCCGTGGTCAGTCAGTAGTGCCATCCTTGCAACTACACAACTTAGTCGATCTCTGGTTTCGAACTGCATCCACAAAAAAAGTACCAACGTCAGTGGGTGCCTCAGCTAAGGATTTTGTGATGGTTTTGTCATATTGTCGAAAGGCTCAAGCTCCTTGA 1323 0.4369 MANQVVKVKRETLEACMTCPLCNKLLKEATTLSLCLHTFCRKCIYEKLSDEEVDCCPVCNIDLGVLPVEKLRPDHNLQDIRAKIFPFKRRKVRAPKVLPSVSLPAKRKERSLSSLVVSAPKVSVQTGFTGRRTKTGARKAGAIRGCSFTFEGPIKKEDTFVEDNPLSSTSPDSSSKSQCTTLAESSRKHRNTEDNEDTVRSKEGKVDLWTPLNCLVEAANRTKSSKFNPPGNSIAKSESPNVNRGDADMPEVEGKDKFSPPSRLILKSKIKDNGHKIKLEDDKNEMALVPGPVKRRRLRPANHKRSRESEMSTSTHVMLDLPGTRSNRKMGPIWFSLVASEDQKADVPLPQISSCYLRIKDGSVPVSSIQKYLVKKLDLASEAEVEIMCRGQSVVPSLQLHNLVDLWFRTASTKKVPTSVGASAKDFVMVLSYCRKAQAP* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00055 440 Gene3D - 299 417 - -
Pte13g00055 440 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Pte13g00055 440 MobiDBLite consensus disorder prediction 163 185 - -
Pte13g00055 440 MobiDBLite consensus disorder prediction 186 202 - -
Pte13g00055 440 MobiDBLite consensus disorder prediction 223 240 - -
Pte13g00055 440 SUPERFAMILY RING/U-box 12 83 - -
Pte13g00055 440 MobiDBLite consensus disorder prediction 160 202 - -
Pte13g00055 440 SMART ring_2 19 59 IPR001841 -
Pte13g00055 440 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 1 438 IPR044807 GO:0004842
Pte13g00055 440 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 111 IPR013083 -
Pte13g00055 440 MobiDBLite consensus disorder prediction 223 244 - -
Pte13g00055 440 CDD RING-HC_PCGF 17 60 - -
Pte13g00055 440 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Pte13g00055 440 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00055 Pte-Chr13 533341 537339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00055 2 360 C3H Transcription Factor Family AT2G30580 44.536 2.26e-88 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00055 K16277 - qsa:O6P43_011217 640.188