Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00044 ATGGCAACTGATCCAAGAGTTATAAAAGCTTTCGATGCCATGAGTGCAATAGGCGTCAGCAGTCAACAGGTGAAACCGGTACTGAAGCACCTCCTGAAATTGTTTGATAAAAAATGGGAGTACATAGAAGAGGAAAATTACCGGACTCTGAAAGATGCATACTTTGAATTTAATCAAAATAAGGGAAAAGAATGCAAAAGAAAAGGTCTTCAAGATGAAGAAAGTTGTAAAGGACGTCCCCGAATTCCGCATTCAGCTGATGAAGATGGCCCAATGTTATTGGCCATGAATGACATGCCACACAATCAATGCAACGAGAAGTTGCTTGAGCCAAAAAGCGAGCAATATTATACGCCTCCCGCTCATAGTTCAATGAACTTTCCTGGACCAGATGCCCAACAGGTGACAGATATAACAAAAGGTACCGAAAAGGTCAAAATATCACTTGTCGATCACAGTGGCATTGAAACTATCCCCATGTTTAATTACATACCACAAAACTTAATATACCAAAGTGCCAATTTGAATATCTCATTGGCTCGAATAGCTGACGAAGATTGTTGTTCACAATGTGCTGGGGATTGTTTGTCAACGTCAATACCTTGTGCATGTGCTAGAGAAACTGGAGGTGAGTTTGCATACACCAAGAAAGGTTTGCTGAAAGAAAATTTTCTGAACTCTTGCTTGTGTATGCGAAGAAAGCCACAAGACCATCATTTTGTTTATTGTGAAGATTGTCCACTTGAGAGGGCAAAGAACGAGTATATGCCACAAAAATGCACGGGACACCTAGTGAGGAAGTTTATAAAGGAATGTTGGAGAAAATGTGGATGTGACATGAGCTGTGGAAATCGAGTGGTACAGCGGGGTTTGACATGCAATTTACAAGTTTTCTTTACTCGAGAAGGTAAGGGTTGGGGCCTTAGAACACTCGAAGCATTGCCGAAGGGAACTTTTGTATGTGAATATGTAGGTGAAATATTGACCAATACAGAACTATACGAAAGGAATGTGCTGGCAAGTGGCAACGAAAGGCACACATACCCGGTAACACTTGATGCGGACTGGGGTTCAGAAGGAGTTCTAAAGGACGAGGAAGCACTTTGTCTGGATGCCACATATCATGGAAATGTTGCTCGGTTTATCAATCATAGATGCAATGATGCAAATCTGGTCGATATCCCAGTTGAAGTGGAGAGCCCTGATCGTCATTACTATCATGTTGCCTTCTTTACTTCCAGGAATGTTGATGCACTTGAAGAGCTAACTTGGGATTATGAGATTGACTTTGATGATCAAGAACATCCTATTAAGGCTTTTAAGTGTTGTTGTAAAAGCAGATTCTGCCGAGACAAGAAACGTAAAGGAAAAAGAAAATTAGAGACCGTGTCCAAACAATGCGACAGGGATTGA 1413 0.4119 MATDPRVIKAFDAMSAIGVSSQQVKPVLKHLLKLFDKKWEYIEEENYRTLKDAYFEFNQNKGKECKRKGLQDEESCKGRPRIPHSADEDGPMLLAMNDMPHNQCNEKLLEPKSEQYYTPPAHSSMNFPGPDAQQVTDITKGTEKVKISLVDHSGIETIPMFNYIPQNLIYQSANLNISLARIADEDCCSQCAGDCLSTSIPCACARETGGEFAYTKKGLLKENFLNSCLCMRRKPQDHHFVYCEDCPLERAKNEYMPQKCTGHLVRKFIKECWRKCGCDMSCGNRVVQRGLTCNLQVFFTREGKGWGLRTLEALPKGTFVCEYVGEILTNTELYERNVLASGNERHTYPVTLDADWGSEGVLKDEEALCLDATYHGNVARFINHRCNDANLVDIPVEVESPDRHYYHVAFFTSRNVDALEELTWDYEIDFDDQEHPIKAFKCCCKSRFCRDKKRKGKRKLETVSKQCDRD* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00044 470 Gene3D - 1 59 IPR043017 -
Pte13g00044 470 ProSiteProfiles Pre-SET domain profile. 191 290 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pte13g00044 470 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 96 - -
Pte13g00044 470 SUPERFAMILY SET domain 152 450 IPR046341 -
Pte13g00044 470 ProSiteProfiles SET domain profile. 293 427 IPR001214 GO:0005515
Pte13g00044 470 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 465 IPR025776 -
Pte13g00044 470 Pfam Pre-SET motif 138 285 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pte13g00044 470 SMART set_7 293 433 IPR001214 GO:0005515
Pte13g00044 470 CDD SET_SETDB-like 159 426 - -
Pte13g00044 470 FunFam SET-domain containing protein lysine methyltransferase family protein 138 452 - -
Pte13g00044 470 SMART preset_2 135 277 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pte13g00044 470 Pfam SET domain 305 426 IPR001214 GO:0005515
Pte13g00044 470 Pfam Ubiquitin-binding WIYLD domain 3 57 IPR018848 -
Pte13g00044 470 Gene3D SET domain 138 452 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00044 Pte-Chr13 447948 453866 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00044 200 450 C2H2 Transcription Factor Family AT2G23740 35.185 1.56e-32 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pte13g00044 Pre-SET 8.6e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00044 - - cave:132171994 606.29