Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g00040 ATGGCGACTCCATCTTCAACCGTTCCATCGTCTTCTTCTTCAACCTCATCTCAATTCACTTACGCAAATTCTTCTTATTTTCCCCTGCCTTTTCACCTTCAACACTCTGCAGCTGCTGTGGCTACACCTGCCTCTCAATACGCGGTTTCTCCATACGCCTCCGCACAGGCTGTTCAGCTTCCAACTGCTTCCGTTTACCCTGCTCCAGCTACGGTCGGCGGCGTTTACTCTATTCCGCAATTCCAACAGGCGCAGCAGTTATTTCAGAGAGACGCATCGAATGTCAGACCTGAAGCAATTGAAGGTGTGAAGGCAGCGATTGCGAGCAGCTATATTGAGCATAAAGTTGATGCGAAGAAGAAAGCAGTTCCTAGAAAAGCTGCTGGTCAATCGTGGGAGGATCCTACTCTCTCAGAATGGCCCGAGAATGATTATCGTGTATTTTGTGGTGATCTTGGCAACGAGGTGAATGATGACGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTTAACATGGCGAGAGTTGTCAGAGATAAGCGGACTGGAAAAACTAAAGGCTATGGGTTTGTTAGCTTTGGCAACCCTTCTGACCTAGCTGCTGCCCTTAAAGAGATGAACGGCAAATATGTTGGAAATCGACCTATCAAACTACGGAAGAGTAATTGGAAAGAGAGGATAGACTACAATGCCTTGGAGAAGCAGAAGAACCAATGTCACAAGAAACAAAAGCAGCCTAAAAAGGGTATACTTCACAAGTAA 762 0.458 MATPSSTVPSSSSSTSSQFTYANSSYFPLPFHLQHSAAAVATPASQYAVSPYASAQAVQLPTASVYPAPATVGGVYSIPQFQQAQQLFQRDASNVRPEAIEGVKAAIASSYIEHKVDAKKKAVPRKAAGQSWEDPTLSEWPENDYRVFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFGNPSDLAAALKEMNGKYVGNRPIKLRKSNWKERIDYNALEKQKNQCHKKQKQPKKGILHK* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g00040 253 Gene3D - 85 220 IPR012677 -
Pte13g00040 253 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 145 223 IPR000504 GO:0003723
Pte13g00040 253 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 147 217 IPR000504 GO:0003723
Pte13g00040 253 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 72 235 - -
Pte13g00040 253 FunFam RNA-binding protein 42 80 230 - -
Pte13g00040 253 SUPERFAMILY RNA-binding domain, RBD 129 224 IPR035979 GO:0003676
Pte13g00040 253 CDD RRM_RBM42 139 221 IPR034215 -
Pte13g00040 253 SMART rrm1_1 146 219 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g00040 Pte-Chr13 439120 443894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g00040 147 227 Eukaryotic Initiation Factors Gene Family AT1G71770 32.979 1.03e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g00040 K25079 - csv:101207945 354.369