Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pte13g00040 | ATGGCGACTCCATCTTCAACCGTTCCATCGTCTTCTTCTTCAACCTCATCTCAATTCACTTACGCAAATTCTTCTTATTTTCCCCTGCCTTTTCACCTTCAACACTCTGCAGCTGCTGTGGCTACACCTGCCTCTCAATACGCGGTTTCTCCATACGCCTCCGCACAGGCTGTTCAGCTTCCAACTGCTTCCGTTTACCCTGCTCCAGCTACGGTCGGCGGCGTTTACTCTATTCCGCAATTCCAACAGGCGCAGCAGTTATTTCAGAGAGACGCATCGAATGTCAGACCTGAAGCAATTGAAGGTGTGAAGGCAGCGATTGCGAGCAGCTATATTGAGCATAAAGTTGATGCGAAGAAGAAAGCAGTTCCTAGAAAAGCTGCTGGTCAATCGTGGGAGGATCCTACTCTCTCAGAATGGCCCGAGAATGATTATCGTGTATTTTGTGGTGATCTTGGCAACGAGGTGAATGATGACGTTCTTTCAAAAGCATTTTCACGATTTCCTTCCTTTAACATGGCGAGAGTTGTCAGAGATAAGCGGACTGGAAAAACTAAAGGCTATGGGTTTGTTAGCTTTGGCAACCCTTCTGACCTAGCTGCTGCCCTTAAAGAGATGAACGGCAAATATGTTGGAAATCGACCTATCAAACTACGGAAGAGTAATTGGAAAGAGAGGATAGACTACAATGCCTTGGAGAAGCAGAAGAACCAATGTCACAAGAAACAAAAGCAGCCTAAAAAGGGTATACTTCACAAGTAA | 762 | 0.458 | MATPSSTVPSSSSSTSSQFTYANSSYFPLPFHLQHSAAAVATPASQYAVSPYASAQAVQLPTASVYPAPATVGGVYSIPQFQQAQQLFQRDASNVRPEAIEGVKAAIASSYIEHKVDAKKKAVPRKAAGQSWEDPTLSEWPENDYRVFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFGNPSDLAAALKEMNGKYVGNRPIKLRKSNWKERIDYNALEKQKNQCHKKQKQPKKGILHK* | 254 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pte13g00040 | 253 | Gene3D | - | 85 | 220 | IPR012677 | - | |
Pte13g00040 | 253 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 145 | 223 | IPR000504 | GO:0003723 | |
Pte13g00040 | 253 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 147 | 217 | IPR000504 | GO:0003723 | |
Pte13g00040 | 253 | PANTHER | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED | 72 | 235 | - | - | |
Pte13g00040 | 253 | FunFam | RNA-binding protein 42 | 80 | 230 | - | - | |
Pte13g00040 | 253 | SUPERFAMILY | RNA-binding domain, RBD | 129 | 224 | IPR035979 | GO:0003676 | |
Pte13g00040 | 253 | CDD | RRM_RBM42 | 139 | 221 | IPR034215 | - | |
Pte13g00040 | 253 | SMART | rrm1_1 | 146 | 219 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pte13g00040 | Pte-Chr13 | 439120 | 443894 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pte13g00040 | 147 | 227 | Eukaryotic Initiation Factors Gene Family | AT1G71770 | 32.979 | 1.03e-07 | 50.4 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pte13g00040 | K25079 | - | csv:101207945 | 354.369 |