Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g01264 ATGGATTTCCATCATGACTCTGAAGATGAAGCTTCCGTTGACACTGGTTTCTACATGGACGAAGAAGATGACTCTTTTGAGTGCTTCTCTGGTGAAGGCTGTGGTGAGTACATATTCAACAAAGCTGCTAAGGTTTTGACGCAGTCCGAGGTGCTACGACTGCAACTAGAGGCGGTTGAAAGAGTCTCGGTTGTACTTTCTATATCAACATCTGCTGCCAGTCTCTTGCTGAGGCATCACGCTTGGAACGAAAGCAAACTGGAGGAAGCATGGTTTGATGATGAACAAGGAGTCAGAAAAGCAGTAGGGCTACTGCCAGAGTTGCCTGTTGCTGATGATCGGGTCAAACAAGGTATCGTTGGAGATATTACTTGTGGGATATGTTTTGATAGTTTTGCAATGAATAATGATATCAAATCCGCTGCATGTGGTCATCCTTACTGTATTGAATGTTGGGTGAGTTTCATTAGGATAGCGATCAAGAATGGTATTGGTTGCTTGACATTGAGATGTCCAGACACTTCTTGTAATGCTGCCATTGATGATGAGATGATTGAGCTTTTGGCCTCAGAAGAAGACAAGATAAGATATGATACCTACCTATGTAGTTCTTACATTGAAAACAGTAAAGTATACAAGTGGTGTCCTGGTCCAGATTGTGAGTATGCCATTGGTTTTCAACGGGTGGGTGATGAGAATGATGAGAACTATGATGTTTCGTGTCTCTGCGGTTTCAAGTTTTGTTGGAACTGTGTAGAAGATGCACATCGTCCAATTGATTGTGAAACTGTAGCAAAGTGGATTGCCAAAAACAATTGTGAGTCTCAAAACATAGACTGGATATTGGCATACACAAAACCTTGTCCCCAATGCAAAAAACCAATAGAGAAAAACGCAGGGTGTATGCACATGAGTTGTCGATGTGGCAAACACTTTTGCTGGCTGTGTCTCCAAGATTGGTTTAGGCATACACATAGAGGCTGCAATGTATTCGACAAATCAGATGAGGAAGAGAGTAAGAAAAGGCATACAGCACAGGCTTCATTGCGGAAGTACACACATTACTATGAACGTTGGGCCGCCAATGAGAAATCAAGACGAAAAGCCCTACAGGACTTTGACGAGTTACAGGCTGAAGAAGTAAAGACGATATGTGATTCTCATATCCAAACTACAGCTGAGGTTAAGTTCATTAGTGAGGCTTGGCTACAGATCGTTGAATGCAGAAGGGTTTTGAAGTGGACATACGCGTATGGTTACTACATGCCGGAGGAGGAGAAGGCCAATAAGTATTTGTTTGAATACTTGCAGGGTCAGGCTGAGCAAGCTCTGGAAAGACTTCATGATGTTGCAGAGAGAGAATTGAAAGAGTTTGTTAATGTCGATAAAAAGGAATTTCACTCTTTCAAGAATAAGCTAATTAGTTTGACAAAAACAACCAAGAGTTATTTTGAGAATTTGGTCACAGCACTGGAAAATGGGCTATCAGATGTACAAGGACGAATATTGACTAAAAAGGCTCGACAGAATGAAGAGGCCGATGAATTTCGAGGTAGCGCCAGTTCTGGCCATGGGAGTGTCACCCTCCCTGCTCTGGTAAGGGACAATAGGGGAGATTATTTCTGGGGTTGTTCATCGTGTACCTTAAAAAACCCTGAATCTGATATGGAATGTCAGGCATGCTCGCAGCCCAGGCCATGGATTTGA 1707 0.4271 MDFHHDSEDEASVDTGFYMDEEDDSFECFSGEGCGEYIFNKAAKVLTQSEVLRLQLEAVERVSVVLSISTSAASLLLRHHAWNESKLEEAWFDDEQGVRKAVGLLPELPVADDRVKQGIVGDITCGICFDSFAMNNDIKSAACGHPYCIECWVSFIRIAIKNGIGCLTLRCPDTSCNAAIDDEMIELLASEEDKIRYDTYLCSSYIENSKVYKWCPGPDCEYAIGFQRVGDENDENYDVSCLCGFKFCWNCVEDAHRPIDCETVAKWIAKNNCESQNIDWILAYTKPCPQCKKPIEKNAGCMHMSCRCGKHFCWLCLQDWFRHTHRGCNVFDKSDEEESKKRHTAQASLRKYTHYYERWAANEKSRRKALQDFDELQAEEVKTICDSHIQTTAEVKFISEAWLQIVECRRVLKWTYAYGYYMPEEEKANKYLFEYLQGQAEQALERLHDVAERELKEFVNVDKKEFHSFKNKLISLTKTTKSYFENLVTALENGLSDVQGRILTKKARQNEEADEFRGSASSGHGSVTLPALVRDNRGDYFWGCSSCTLKNPESDMECQACSQPRPWI* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g01264 568 ProSiteProfiles Zinc finger RING-type profile. 125 172 IPR001841 -
Pte12g01264 568 Gene3D - 257 498 - -
Pte12g01264 568 ProSiteProfiles Zinc finger RanBP2 type profile. 536 567 IPR001876 -
Pte12g01264 568 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 210 IPR013083 -
Pte12g01264 568 SUPERFAMILY RING/U-box 122 207 - -
Pte12g01264 568 FunFam RBR-type E3 ubiquitin transferase 120 209 - -
Pte12g01264 568 SUPERFAMILY RING/U-box 280 329 - -
Pte12g01264 568 ProSitePatterns Zinc finger RanBP2-type signature. 542 561 IPR001876 -
Pte12g01264 568 FunFam RBR-type E3 ubiquitin transferase 258 498 - -
Pte12g01264 568 Pfam Ariadne domain 336 495 IPR045840 -
Pte12g01264 568 SMART ibrneu5 265 328 IPR002867 GO:0008270
Pte12g01264 568 SMART ibrneu5 195 261 IPR002867 GO:0008270
Pte12g01264 568 CDD BRcat_RBR_ANKIB1 204 270 - -
Pte12g01264 568 SUPERFAMILY RING/U-box 196 268 - -
Pte12g01264 568 Pfam IBR domain, a half RING-finger domain 196 261 IPR002867 GO:0008270
Pte12g01264 568 Pfam IBR domain, a half RING-finger domain 284 328 IPR002867 GO:0008270
Pte12g01264 568 ProSiteProfiles TRIAD supradomain profile. 121 332 IPR044066 -
Pte12g01264 568 Gene3D - 538 567 - -
Pte12g01264 568 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 58 415 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g01264 Pte-Chr12 34824975 34826681 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g01264 45 565 ARIADNE family AT1G65430 47.103 6.40e-176 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g01264 K11968 - qsa:O6P43_028117 561.607