Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g01262 ATGGGGAAATCAAGCAAAAACGCCATTGCAAAAGTTGACGCATCTCCTGCCGTTTTACAATCCACGAAGTCCGGAAAGAATGGTAAAAGAGAAGCTGAAGATGAACTTCCGAAGCAAGCAAGTGCAAAAAAGTCGAAGAGAAATGAAAATGCTGAACAGATTGCTCAGAAGAAAAAGATAGAAGTGAAGAAGCAAAATATCGAAGAAGAAAGTTCTGATGACTCATCCTCGGAATCTGAGAAACCTGTGGCAAAAGCAGTCCTTACTCCAAAGGAACAGCCTGCAAATGCTCCTCCACCTAAGGAAAAACCAGCCAGTGATTCAGATTCCTCTTCAGATGACGAATCAGATGCTTCAGATGAGGATAACGTCCCCCAAAACAAGAAAGTGCCTGCTGTTTCTGCTAAGAATGGATCTGCTTCTCAGAAGAAAAAAGATGATTCAAGTGACAGCTCAGAATCAGAGGATTTGAAGAACACTGTTTCCAAGAATTTGCCTGCTAAGAAGGTTGAATCAACTGATGATGACAGCAGTTCTGATGATAATGATGCGAAATCCAATGGAAATGCAGCATCAGACAAAAAGTTGCCTGCTACAAAGAAGGGAACTCCATTGAAGAAATCTGAAACAAGTGAAAGCTCTGAGGAAGACTCGAGTGACAGCTCAGATGATGATGATGATAAAGCTGAATCAAGTGAGAGCTCTGAGTCTGATACTGAGGACAGCTCAGATGATGACAGTGAAGAGGACTTAAAAGCTCCAGCTCAAGCCAAGAATAGTGTACCTACTCCTATAAGTACCCCTGTGGCTTTCGAAAAGATGTCAGAGTCAAGAGATGAGGTGAAAGCACATGCTGCCATGACTAGTGCACATGCTCCTAAAACTACCTTTTTGGCTTCTGAAATGAAGTCTGAGTCAAGTGATGATGACTCGAGTGATGATGAGAGCAGTTCTGATGATGACTCAAGTGATGATGAGAGCAGTTCTGATGATGAGTCGAAAGCCCCTGCTACTCCAAATGTGGAAAGTTCCTCAGGAAGGACTCTCTTTGTTGGCAATTTGTCATATAGTGTGTCAGAAGAGGATGTGACAAACTTCTTCAAAAATGCTGGAGAGATTGTGGATGTTCGTTTTGCTACGGCTGATGATGGGAGGTTTAAGGGATTTGGACATGTGGAATTTGCTAATGCAGAATCAGCAAAAAAAGCTCTTGCCTTGAACAGAAAGGAGTTGCTTAGTCGTCCAGTGAAACTTGACATGGCTGTTGAAAGGGGTGCATACACCCCGCATAGCAGCAGCAACAATAGCAACTCTTTCCAGAAAGGCCAAGCTCATACTGTGTTTGTGCGTGGTTTTGATACATCTCTTGGGGTGGATGAGGTAAGAAGCAGCCTTCAAGAAGTTTTTAGTTCTTGTGGAGAGATTAGCAGGATATCTGTCCCAAAAAATTTTGATTCTGGTGAAATAAAAGGGTTTGCCTACGTTGATTTCAATGATGCTGATAGTTTCAATCAGGCACTAGAACTTAATGGATCTGATCTTGGGGGTTACTCTATCCATGTGGATGAAGCAAAACCACGAGATAATCAATCAGGAGGTGGTAGAGGTGGCTTTGGGAGGAGTGGTGGTAGAGGTGGTTTTGGAAGGAGTGGTGGCAGAGGAAGTGGCAGAGAAGGTGGTGGCCAATTTAGTGGAGGACGTGGAGGCAGAGGTGGAGGTGGTCGTGGAGGACGTGGGGCACCTGGTAAGCCAAGTCTTGCAGCTCCTGGGACAGGGATGAAGACTACTTTTGAAGATGAAGATTAG 1806 0.4402 MGKSSKNAIAKVDASPAVLQSTKSGKNGKREAEDELPKQASAKKSKRNENAEQIAQKKKIEVKKQNIEEESSDDSSSESEKPVAKAVLTPKEQPANAPPPKEKPASDSDSSSDDESDASDEDNVPQNKKVPAVSAKNGSASQKKKDDSSDSSESEDLKNTVSKNLPAKKVESTDDDSSSDDNDAKSNGNAASDKKLPATKKGTPLKKSETSESSEEDSSDSSDDDDDKAESSESSESDTEDSSDDDSEEDLKAPAQAKNSVPTPISTPVAFEKMSESRDEVKAHAAMTSAHAPKTTFLASEMKSESSDDDSSDDESSSDDDSSDDESSSDDESKAPATPNVESSSGRTLFVGNLSYSVSEEDVTNFFKNAGEIVDVRFATADDGRFKGFGHVEFANAESAKKALALNRKELLSRPVKLDMAVERGAYTPHSSSNNSNSFQKGQAHTVFVRGFDTSLGVDEVRSSLQEVFSSCGEISRISVPKNFDSGEIKGFAYVDFNDADSFNQALELNGSDLGGYSIHVDEAKPRDNQSGGGRGGFGRSGGRGGFGRSGGRGSGREGGGQFSGGRGGRGGGGRGGRGAPGKPSLAAPGTGMKTTFEDED* 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g01262 601 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 349 416 IPR000504 GO:0003723
Pte12g01262 601 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 463 520 IPR000504 GO:0003723
Pte12g01262 601 Coils Coil 48 70 - -
Pte12g01262 601 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 113 483 - -
Pte12g01262 601 SMART rrm1_1 446 522 IPR000504 GO:0003723
Pte12g01262 601 SMART rrm1_1 348 419 IPR000504 GO:0003723
Pte12g01262 601 MobiDBLite consensus disorder prediction 26 80 - -
Pte12g01262 601 MobiDBLite consensus disorder prediction 307 328 - -
Pte12g01262 601 SUPERFAMILY RNA-binding domain, RBD 338 432 IPR035979 GO:0003676
Pte12g01262 601 MobiDBLite consensus disorder prediction 523 601 - -
Pte12g01262 601 Gene3D - 270 429 IPR012677 -
Pte12g01262 601 MobiDBLite consensus disorder prediction 199 214 - -
Pte12g01262 601 SUPERFAMILY RNA-binding domain, RBD 433 556 IPR035979 GO:0003676
Pte12g01262 601 CDD RRM2_NUCLs 446 524 IPR034350 -
Pte12g01262 601 MobiDBLite consensus disorder prediction 1 346 - -
Pte12g01262 601 MobiDBLite consensus disorder prediction 168 182 - -
Pte12g01262 601 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 445 526 IPR000504 GO:0003723
Pte12g01262 601 MobiDBLite consensus disorder prediction 215 248 - -
Pte12g01262 601 Gene3D - 430 545 IPR012677 -
Pte12g01262 601 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 347 423 IPR000504 GO:0003723
Pte12g01262 601 MobiDBLite consensus disorder prediction 140 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g01262 Pte-Chr12 34789431 34794270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g01262 348 521 Eukaryotic Initiation Factors Gene Family AT4G34110 27.119 3.62e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g01262 K11294 - qsa:O6P43_026103 365.155