Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g01260 ATGATCCGGGAATTTAACGGGTCGGATCGTCGGATTCTCACATTTTCGGCGGTTCATCCATGTGAAAACATAGCACCCATTACCCTAATCAGTTCGTTGATAACATTTTGTCAAACCATTTGCCATTACAGATCCAAATTCTTCGGCAGTAATCGGCGTAATGCTCGTGAATCAATTCGTATGGTTGGGGTTCTTCGGATCCTTCTTGAGGAAATTCGGGTGGATCACTCGGATATTCTGGAATCAGTTAAACTGAGCTTTTCCGAGCTCCATTTGGTACTGCAGAAGCTTAACTTCTTGTTGCAGGATTGTACTCGTGAAAATGCTCGGTTATGGATGTTGATGGAGTCGGATCGAGTGGCTACCCAGTTTCGGGTCTTGATCCGGTCCATTGGCACAGCACTTGATGTGCTTCCTTTGGAGTCATTAGAGGTTTCAGAGGAAGTGAGAGAGCTTGTTGTGTTGCTGTTGAAGCAAGCGCGAAAGCCGGGGTTTGACGTTGACCCAACTGATAAACGGGTCAAAGTGACGGTTACTTCGATAATGAATCAGTTCGAGAGTGGAATCATTCCTTCTGAAAGTGATTTGAGATGGATTCTTGATTCCGTTGGAATCAGAAGCTGGATTGAATGCAACAGAGAAGTCAAATTTTTGGAGTCTGAAATAGGGTTGGAGTGTTTGAATGAAGAGAAGCGGAGGCTATCTTTGCTAAGTGGCCTAATGGGTTTCATGAGTTACTGCAGATGTGTGGTATTTGACGCGGTTGACGGTGAAGGGGACAGAAAAGATATGGATGGAAGAGAGAGTACCAGGGATATTGGAATCCTAGGTTCTCTGAATCCAGATGATTTCCGATGTCCTATTTCTTTGGAGTTCATGGTTGACCCCGTGACTATTGTTACAGGTCATACTTATGATCGTTCTTCAATTCTTAAATGGTTCAGAAGCGGGAATCCCACTTGTCCCAAGACGGGTAAAAAACTATACAATACTGAGTTGGTGCCCAATGTGGCACTGAGGAAGCTGATTCAGCAATTTTGCACTGCAAATGGTTTCCGTTTTCCTGATTCTAGTAGGAAGAATCGTGATAGTTCGATGATTGTTCCTGCAAGCTTGACTGATGAGGAGGCAATGAAAATGCTGGCGAGTTTCCTTGTTGGAAAGCTTGAGAATGGAGGACGGAATGGAAGGGATAAGGCTGTTTATGAAGTTCGGCTTCTCTCCAAAACATACAATTTTAATAGGCTATGTTTGGTGGAAGCTGGAGCTATCCCATGTTTGCTGAAGCTGTTGTCATCAAGGGATAGTTCAACGCAAGATAATGCTATTGCAGGCCTTTTGAACCTGTCAAAACATCCTAAGGGTAGAGCTGTGATAGTTGAGAATTGGGGACTCCAACTGATTGTTGAAGTGCTCAAGAAAGGTGTAAAAATTGAATCTCGGCAACACGCTGCTGCTACTTTGTTTTACCTTGCTTCAGTTGAAGATAACCGGAGACTAATTGGTGGTGTACATGAAGCAATTCCAGCCTTGATCAAGCTCATCAAAGATGGCAATGATCAAGGCAAGAAAAATGGCTTGGTTGCCTTGTTTGGGCTGCTTATGCACCCTGAAAACCACAGGAAGGTGCTTGCTGCTGGTGCTGTTCCTTTGCTTATTAATCTTGCAAGGTCTTGTGAGAGAGAAGAGCCGCAAACTGATTCCCTTGCTATCTTGGCTACTCTTGCAGAAAAACGTGAGGGGTCAATTGCAATTCTGCAGTGTCAAGCCTTGAATGTAGTTGTTGAACTTTTGATATATTCTTCCACTTCAAGGGCAGCAAAGGAGAACTGTGTCTCGATACTGCTATCTCTGTCAACACATGGTGGAGCAGATGTTGTTGCCCTCTTGGTAAAGAACACTTCCTTGATGGGGTGCTTGTATTCGGTGCTAGGCGAAGGAACATCTCGAGCAAGTAAGAAGGCCAGTGCTCTCATCAGAGTCCTCCATGACTTTTATGAAAGAAGCACGTCTGGTTTTAAGGTTCCAGCCATTCCACAAGAACAGTTTGTTCATGTATGGTAA 2064 0.4419 MIREFNGSDRRILTFSAVHPCENIAPITLISSLITFCQTICHYRSKFFGSNRRNARESIRMVGVLRILLEEIRVDHSDILESVKLSFSELHLVLQKLNFLLQDCTRENARLWMLMESDRVATQFRVLIRSIGTALDVLPLESLEVSEEVRELVVLLLKQARKPGFDVDPTDKRVKVTVTSIMNQFESGIIPSESDLRWILDSVGIRSWIECNREVKFLESEIGLECLNEEKRRLSLLSGLMGFMSYCRCVVFDAVDGEGDRKDMDGRESTRDIGILGSLNPDDFRCPISLEFMVDPVTIVTGHTYDRSSILKWFRSGNPTCPKTGKKLYNTELVPNVALRKLIQQFCTANGFRFPDSSRKNRDSSMIVPASLTDEEAMKMLASFLVGKLENGGRNGRDKAVYEVRLLSKTYNFNRLCLVEAGAIPCLLKLLSSRDSSTQDNAIAGLLNLSKHPKGRAVIVENWGLQLIVEVLKKGVKIESRQHAAATLFYLASVEDNRRLIGGVHEAIPALIKLIKDGNDQGKKNGLVALFGLLMHPENHRKVLAAGAVPLLINLARSCEREEPQTDSLAILATLAEKREGSIAILQCQALNVVVELLIYSSTSRAAKENCVSILLSLSTHGGADVVALLVKNTSLMGCLYSVLGEGTSRASKKASALIRVLHDFYERSTSGFKVPAIPQEQFVHVW* 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g01260 687 Gene3D - 372 664 IPR011989 -
Pte12g01260 687 SUPERFAMILY RING/U-box 280 355 - -
Pte12g01260 687 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Pte12g01260 687 SUPERFAMILY ARM repeat 381 662 IPR016024 -
Pte12g01260 687 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 422 464 IPR000225 GO:0005515
Pte12g01260 687 PANTHER U BOX DOMAIN-CONTAINING 58 662 - -
Pte12g01260 687 FunFam RING-type E3 ubiquitin transferase 280 352 - -
Pte12g01260 687 Pfam U-box domain 281 350 IPR003613 GO:0004842|GO:0016567
Pte12g01260 687 SMART arm_5 411 451 IPR000225 GO:0005515
Pte12g01260 687 SMART arm_5 536 577 IPR000225 GO:0005515
Pte12g01260 687 SMART arm_5 452 493 IPR000225 GO:0005515
Pte12g01260 687 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 354 IPR013083 -
Pte12g01260 687 Pfam Armadillo/beta-catenin-like repeat 414 450 IPR000225 GO:0005515
Pte12g01260 687 FunFam RING-type E3 ubiquitin transferase 359 673 - -
Pte12g01260 687 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Pte12g01260 687 CDD RING-Ubox_PUB 281 333 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g01260 Pte-Chr12 34753616 34755966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g01260 1 688 U-box Gene Family AT1G10560 45.364 0.0 573
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g01260 - - pvy:116121335 766.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g01260 12 34753616 34755966 Pte12g01260 12 34753616 34755966 RCT