Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g01249 ATGCGAGAAACGAGGAAGTGTAAAGAGAAGAGTCAGATGTCTAAGAACCTCTGGAAGAAGCAGGAGATAACAATGAGAGGTTTGGATAGAGCAGTGGAATTGCTTAGACCCTTAGTTGAAACTAAGACTTTGGACTATTGTGTTGTTTGGAAGCAAGGAGATGACCCATCTAGTTTCATCGAATGGATGGGTTGTTGTTGTAGTGGCGGTTGTGCTAGCAAATATGAGCAACGGGAGTTACGTGACAATGTGAAAGTAGAGAAAGGAGAAGATCAGAATTTAGCTGCCATTTGCAAGGACACCCATTTTCCGCACATTCTGAACACAAAAGCTTGTGAGGCTCTTGTCAAGCTTCCTTCTTCCATGTCTCTGTATTCTGGAATTCATGGGGAGGTCGTTATATCAAACCAACCACGGTGGCTTACCTATATAATTCCCTCGGAGTCAAATACTTCACATAGCTTAACTGGAACGCAAGTTTTGATTCCAGTTAATGGCGGACTTATTGAGCTCTTCACTGCAAAACATATACCAAAAGATCAGAAGATCATAGACTATGTAACAGCTCGATGTACTGTTCCTTTGGAACAAGAAGTCATGTCTACAAGCTGTACTAGTTTGAGCCCAGGCGAGCATCAAATGCAAGAGGAAGATTACTCAAAGAATTGGCAGCAGATGATGCATATGTTACCTTTCATCCCTAGGGTACCTCTTCATACAGCATCCGATTCCAGTTCCCATCCTTCAATAGAAGGATCATCATTTGATTCAAAGCTCGGTTATCTAACTCAATATGAATCTATGAAGCAACCAATTGACAAATCTACAGGTTCTAGAAGGCTCAGGCACCAAGAACACGTCAACAAAAAACTGAGAAGTTTGGGATGCAATAGTGAGATTGTGGAAGGGAAAGGGAAAGCTAAAGCTGCTCAAGGACCAGACACTGAATACTGCTTATCTAAAAATCTTGTCAGTGAGAGAAACAGGAGAACGAGAATTCGAAATAATCTATATGCTTTACGTGCTCTAGTCCCAAATATAAGCAAGATGGACAGAGCATCAATTGTCTTAGATGCTATTGATCATATAAAGGAGCTGCAGAAGCAAGAAAATGAACTCCGGAATAAGCTCACTGCTTTAGGAGCAGAAGACCTTGAGAAAAGAAAATTGGGATCACGTGTTCATGTGCCAAAGAAGGAGAAAGGAGGAATGGCTGTTTTATCACAATCTGAGAGCAATCAGTATCTGCCTAGCTGCATAATGCAGAAGCAGACAGAGGTGAGTATAGAAGTAAAACAGATTGGAACAAGAGAATGCTTAATTGAAGTGTGTTGTAAGCACAAGCAGGGAGGATTTAGAAAATTGATGGAGTCTCTGCATTCTATGAGATTCGTGGTAGTTAGTGCCAACGTAACCACACTCAAGGATGAAGTCCTCAACATGCTGAAAGTTGAGGTATGTGCCAAACCAATGGAGATATCAGACATAGAAAGTAGTAGCTGCGCTCAATCTTATATCATCTATCGGGGAAGGATATTTAGCTAA 1545 0.4123 MRETRKCKEKSQMSKNLWKKQEITMRGLDRAVELLRPLVETKTLDYCVVWKQGDDPSSFIEWMGCCCSGGCASKYEQRELRDNVKVEKGEDQNLAAICKDTHFPHILNTKACEALVKLPSSMSLYSGIHGEVVISNQPRWLTYIIPSESNTSHSLTGTQVLIPVNGGLIELFTAKHIPKDQKIIDYVTARCTVPLEQEVMSTSCTSLSPGEHQMQEEDYSKNWQQMMHMLPFIPRVPLHTASDSSSHPSIEGSSFDSKLGYLTQYESMKQPIDKSTGSRRLRHQEHVNKKLRSLGCNSEIVEGKGKAKAAQGPDTEYCLSKNLVSERNRRTRIRNNLYALRALVPNISKMDRASIVLDAIDHIKELQKQENELRNKLTALGAEDLEKRKLGSRVHVPKKEKGGMAVLSQSESNQYLPSCIMQKQTEVSIEVKQIGTRECLIEVCCKHKQGGFRKLMESLHSMRFVVVSANVTTLKDEVLNMLKVEVCAKPMEISDIESSSCAQSYIIYRGRIFS* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g01249 514 Coils Coil 356 383 - -
Pte12g01249 514 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 34 188 IPR025610 -
Pte12g01249 514 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 320 381 IPR036638 GO:0046983
Pte12g01249 514 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 176 487 - -
Pte12g01249 514 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 317 366 IPR011598 GO:0046983
Pte12g01249 514 Pfam Helix-loop-helix DNA-binding domain 325 367 IPR011598 GO:0046983
Pte12g01249 514 Gene3D - 319 383 IPR036638 GO:0046983
Pte12g01249 514 SMART finulus 323 372 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g01249 Pte-Chr12 34476533 34480674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g01249 32 485 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 30.469 3.01e-59 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte12g01249 bHLH-MYC_N 3.4e-18 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g01249 - - qsu:112031104 407.142