Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g01239 ATGATCCTTCATCGCTCAGCTTCACTGCTACATTTTCACAAACAGCTATCAGTACTATCTATTCCATCCAAACTCTCTTCCCATTTCAAATTTCATTCCTACTCTTCGCTTTGCAAATCAACTTCCGTTTCTGCGATTCGGGTTCACTTGTTTCGTGGTTTCCAACCTTGCCAAAGACAGTTCAGAGCGTTTGGAAATGCTGTTGCTGTGACGGAAACTGCACTAGAAGAGAACAAGGGAATAGATACTTTTTTTGCTGATGAAACCGTTTCTTGGAGCTCCTTGGGTCTGTCTGATACTGTTTCTCGTACTCTTTCCATTTCCGGGATTGAGAGACCGTCCTTAATTCAGGCTGCTTCGATACCAACTGTACTTTCAGGTGGGGATGCAGTCATTGCAGCAGAGACTGGTAGTGGTAAAACGCATTGTTACCTGGTTCCTCTTATTGATAAGCTTTGTGGCGGTGGTGATCGTTCTGTAAATTCTGCCTTGGATAAAGAGCCGTCCCTACCTCAAAAAATTGTGCTTGTTCTTTGTCCAAATGTGCTTCTATGTGAACAAGTAGCTAGGATGGCTAATAGTCTTTGCCGTGACAATGGCGAATCTCTTGTAAGAGTTGCGTCAGTATGTGGCACACAGGGATGGCCAGTCCACAAGCCTGACATTATTGTGACGACCCCTGCTGCACTTTTGAATTATATCAATCCAAATAAGTACCGTAGACTTCAATTTCTGCGTGCTGTTAAACATGTGGTGTTTGATGAAGCAGATATACTTTTGTGTGGAGGGTTTCAAAACAAGGTCATTCATTTAATAAACATGTTTCGTCATGATGAAAAACTATTGTCTAAGTCAAGAGACTGTGTGGAAGATCTGCCAGCTGAAATGGATGATGAAGTAACTGAAGATTTCTACATTTCAGAGGATGAAGATGACCTAGCAACTGAAATTGCCTTAGAAATGGAAGAAAAACATGAAAACACTCTTGATATTCATGATGAAGCTGGATCTACCAAAAGAAAAGATTGGAAGAGAGTGCGAACAAGTTATAATCGCAAAGCCAATTGGGTTAATGGAAACTACCTTCACTGTCACAATCCAAGATTGAAGCAACAATGGACTGAAGTTACCGTTGAGACACAAGTGGATGCACTTGTAATAGCAGTAAATGAAGGGCATCAAGAGATGGCTGATAATGGTGTAAGTCGAACAATGATCTTTGCCAACACTGTTGAGGCCGTTGAAGCAGTATCAAAAATATTGTTAAGATCTGGGATTGAAAGTTCACGTTACCATAAGGAGTGCTCTTTGGAGGAGCGAGCAAAGGTCTTAATTGACTTCAAAGAGAAAGGTGGTGTTCTTGTTTGTACAGATGCAGCTGCACGTGGTATTGACATTCCAAATGTCTCACATGTTATTCAGGCAGATTTTGCTACTTCTGCTGTTGACTTTTTGCATAGGATTGGGCGCACGGCTAGAGCTGGTCAAAATGGACTTGTGACCAATATGTACACCGAGGCCAACAGAGAACTGGTTCGTGTTGTTCGTCAAGCAGCAGAGCTTGGTCGGCCTTTGGAGACAGCATTCAGCAGGAAAAGGAGTTTCCGTAACAAGCTAAAAAAGAGAAGCAGAGGTTCTATGGAAGTCAGAGATCCATTACGCGTTAAAGAGAGTGCTGTGGCATGA 1686 0.4229 MILHRSASLLHFHKQLSVLSIPSKLSSHFKFHSYSSLCKSTSVSAIRVHLFRGFQPCQRQFRAFGNAVAVTETALEENKGIDTFFADETVSWSSLGLSDTVSRTLSISGIERPSLIQAASIPTVLSGGDAVIAAETGSGKTHCYLVPLIDKLCGGGDRSVNSALDKEPSLPQKIVLVLCPNVLLCEQVARMANSLCRDNGESLVRVASVCGTQGWPVHKPDIIVTTPAALLNYINPNKYRRLQFLRAVKHVVFDEADILLCGGFQNKVIHLINMFRHDEKLLSKSRDCVEDLPAEMDDEVTEDFYISEDEDDLATEIALEMEEKHENTLDIHDEAGSTKRKDWKRVRTSYNRKANWVNGNYLHCHNPRLKQQWTEVTVETQVDALVIAVNEGHQEMADNGVSRTMIFANTVEAVEAVSKILLRSGIESSRYHKECSLEERAKVLIDFKEKGGVLVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRIGRTARAGQNGLVTNMYTEANRELVRVVRQAAELGRPLETAFSRKRSFRNKLKKRSRGSMEVRDPLRVKESAVA* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g01239 561 SMART helicmild6 415 495 IPR001650 -
Pte12g01239 561 Gene3D - 59 328 IPR027417 -
Pte12g01239 561 CDD SF2_C_DEAD 369 504 - -
Pte12g01239 561 MobiDBLite consensus disorder prediction 540 561 - -
Pte12g01239 561 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 90 118 IPR014014 GO:0003724
Pte12g01239 561 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 381 543 IPR001650 -
Pte12g01239 561 Pfam Helicase conserved C-terminal domain 402 495 IPR001650 -
Pte12g01239 561 MobiDBLite consensus disorder prediction 541 561 - -
Pte12g01239 561 SMART ultradead3 109 307 IPR014001 -
Pte12g01239 561 Pfam DEAD/DEAH box helicase 116 281 IPR011545 GO:0003676|GO:0005524
Pte12g01239 561 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 121 274 IPR014001 -
Pte12g01239 561 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 121 507 IPR027417 -
Pte12g01239 561 CDD DEADc 109 282 - -
Pte12g01239 561 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 91 523 - -
Pte12g01239 561 Gene3D - 368 558 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g01239 Pte-Chr12 34128517 34132360 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g01239 53 512 Eukaryotic Initiation Factors Gene Family AT1G72730 26.371 2.10e-21 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g01239 - - qsa:O6P43_025347 684.871