Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g01226 ATGATCCTTCATCGCTCAGCTTCACTGCTACATTTTCACAAACAGCTATCAGTACTATCTATTCCATCCAAACTCTCTTCCCATTTCAAATTTCATTCCTACTCTTCGCTTTGCAAATCAACTTCCGTTTCTGCGATTCGGGTTCACTTGTTTCGTGGTTTCCAACCTTGCCAAAGACAGTTCAGAGCGTTTGGAAATGCTGTTGCTGTGACGGAAACTGCACTAGAAGAGAACAAGGGAATAGATACTTTTTTTGCTGATGAAACCGTTTCTTGGAGCTCCTTGGGTCTGTCTGATACTGTTTCTCGTACTCTTTCCATTTCCGGGATTGAGAGACCGTCCTTAATTCAGGCTGCTTCGATACCAACTGTACTTTCAGGTGGGGATGCAGTCATTGCAGCAGAGACTGGTAGTGGTAAAACGCATTGTTACCTGGTTCCTCTTATTGATAAGCTTTGTGGCGGTGGTGATCGTTCTGTAAATTCTGCCTTGGATAAAGAGCCGTCCCTACCTCAAAAAATTGTGCTTGTTCTTTGTCCAAATGTGCTTCTATGTGAACAAGTAGCTAGGATGGCTAATAGTCTTTGCCGTGACAATGGCGAATCTCTTGTAAGAGTTGCGTCAGTATGTGGCACACAGGGATGGCCAGTCCACAAGCCTGACATTATTGTGACGACCCCTGCTGCACTTTTGAATTATATCAATCCAAATAAGTACCGTAGACTTCAATTTCTGCGTGCTGTTAAACATGTGGTGTTTGATGAAGCAGATATACTTTTGTGTGGAGGGTTTCAAAACAAGGTCATTCATTTAATAAACATGTTTCGTCATGATGAAAAACTATTGTCTAAGTCAAGAGACTGTGTGGAAGATCTGCCAGCTGAAATGGATGATGAAGTAACTGAAGATTTCTACATTTCAGAGGATGAAGATGACCTAGCAACTGAAATTGCCTTAGAAATGGAAGAAAAACATGAAAACACTCTTGATATTCATGATGAAGCTGGATCTACCAAAAGAAAAGATTGGAAGAGAGTGCGAACAAGTTATAATCGCAGTAAACAGTATATTTTTGTGGCTGCTACCCTGCCAATGAACGGAAAAAAAACTGCTGGGGCAATGTTGAAACATCTATTTCCAGAAGCCAATTGGGTTAATGGAAACTACCTTCACTGTCACAATCCAAGATTGAAGCAACAATGGACTGAAGTTACCGTTGAGACACAAGTGGATGCACTTGTAATAGCAGTAAATGAAGGGCATCAAGAGATGGCTGATAATGGTGTAAGTCGAACAATGATCTTTGCCAACACTGTTGAGGCCGTTGAAGCAGTATCAAAAATATTGTTAAGATCTGGGATTGAAAGTTCACGTTACCATAAGGAGTGCTCTTTGGAGGAGCGAGCAAAGGTCTTAATTGACTTCAAAGAGAAAGGTGGTGTTCTTGTTTGTACAGATGCAGCTGCACGTGGTATTGACATTCCAAATGTCTCACATGTTATTCAGGCAGATTTTGCTACTTCTGCTGTTGACTTTTTGCATAGGATTGGGCGCACGGCTAGAGCTGGTCAAAATGGACTTGTGACCAATATGTACACCGAGGCCAACAGAGAACTGGTTCGTGTTGTTCGTCAAGCAGCAGAGCTTGGTCGGCCTTTGGAGACAGCATTCAGCAGGAAAAGGAGTTTCCGTAACAAGCTAAAAAAGAGAAGCAGAGGTTCTATGGAAGTCAGAGATCCATTACGCGTTAAAGAGAGTGCTGTGGCATGA 1770 0.422 MILHRSASLLHFHKQLSVLSIPSKLSSHFKFHSYSSLCKSTSVSAIRVHLFRGFQPCQRQFRAFGNAVAVTETALEENKGIDTFFADETVSWSSLGLSDTVSRTLSISGIERPSLIQAASIPTVLSGGDAVIAAETGSGKTHCYLVPLIDKLCGGGDRSVNSALDKEPSLPQKIVLVLCPNVLLCEQVARMANSLCRDNGESLVRVASVCGTQGWPVHKPDIIVTTPAALLNYINPNKYRRLQFLRAVKHVVFDEADILLCGGFQNKVIHLINMFRHDEKLLSKSRDCVEDLPAEMDDEVTEDFYISEDEDDLATEIALEMEEKHENTLDIHDEAGSTKRKDWKRVRTSYNRSKQYIFVAATLPMNGKKTAGAMLKHLFPEANWVNGNYLHCHNPRLKQQWTEVTVETQVDALVIAVNEGHQEMADNGVSRTMIFANTVEAVEAVSKILLRSGIESSRYHKECSLEERAKVLIDFKEKGGVLVCTDAAARGIDIPNVSHVIQADFATSAVDFLHRIGRTARAGQNGLVTNMYTEANRELVRVVRQAAELGRPLETAFSRKRSFRNKLKKRSRGSMEVRDPLRVKESAVA* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g01226 589 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 409 571 IPR001650 -
Pte12g01226 589 Pfam Helicase conserved C-terminal domain 430 523 IPR001650 -
Pte12g01226 589 CDD SF2_C_DEAD 397 532 - -
Pte12g01226 589 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 90 118 IPR014014 GO:0003724
Pte12g01226 589 MobiDBLite consensus disorder prediction 568 589 - -
Pte12g01226 589 MobiDBLite consensus disorder prediction 569 589 - -
Pte12g01226 589 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 121 381 IPR014001 -
Pte12g01226 589 SMART helicmild6 443 523 IPR001650 -
Pte12g01226 589 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 121 535 IPR027417 -
Pte12g01226 589 Pfam DEAD/DEAH box helicase 116 285 IPR011545 GO:0003676|GO:0005524
Pte12g01226 589 CDD DEADc 109 282 - -
Pte12g01226 589 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 100 551 - -
Pte12g01226 589 Gene3D - 59 379 IPR027417 -
Pte12g01226 589 Gene3D - 398 586 IPR027417 -
Pte12g01226 589 SMART ultradead3 109 400 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g01226 Pte-Chr12 33733789 33738357 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g01226 384 549 Eukaryotic Initiation Factors Gene Family AT5G11200 28.125 1.65e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g01226 - - qsa:O6P43_025347 751.51