Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g01223 ATGGACGTGGTTTTTTCACAGCAGTGGAGGTCGGAGGAGGTGGGAATGGTTCATGTTTCAGAGTCTCAAGTGGGAGAGGTTCATGTTTTGGCTGTGGATGACAGCCCAGTGGATCGCAAAGTCATTGAACATTTGCTCAAGATTTCCTCGTGCAAAGTGACTGCTCTGGATAGTGGAAGGAGTGCTCTGCAATTCCTTGGTTTGAATGAAGACAAGTCATCGGTTCGTTTTGATGGAATGAAGGTGGATTGGATCATCACGGATTACTGTATGCCTGAAATGACTGGTTTTGAATTGCTCAAGAAGATCAAGGAGTCATCTAGTTTCAGAGAAATCCCAGTTGTGATTATGTCCTCTGAGAACGTTTCGACACGCATTAATAGGTGCATTGAAGAAGGAGCAGAGGATTTCTTAGTGAAACCGGTGAAGCTATCAGATGTGAAAAGGTTGATGAATTATATGATGAGGGAAGTTAAAAGAGCAGGAAGTGAAGAAACTGAACAGGACAGAGATAAACAAGATGGCGTGGATGGAGTTGGAGAAGGAATTGGTTCAAGCAATAAAAAAAAGTCGTCAAGAGGAAGTTGTGATTTCTCTACAGCATCATCAACTGCTTCATCATCTCTACCCAATTCACCATCAAGATTACTACTATCATCATCTTCATCAACCCCACAAGATTCTGCGTCATTTGCACCTACTCATCTTGATTCCCCAATCAGACTTCTCAAAATGAATACTACAGATACATAA 753 0.4197 MDVVFSQQWRSEEVGMVHVSESQVGEVHVLAVDDSPVDRKVIEHLLKISSCKVTALDSGRSALQFLGLNEDKSSVRFDGMKVDWIITDYCMPEMTGFELLKKIKESSSFREIPVVIMSSENVSTRINRCIEEGAEDFLVKPVKLSDVKRLMNYMMREVKRAGSEETEQDRDKQDGVDGVGEGIGSSNKKKSSRGSCDFSTASSTASSSLPNSPSRLLLSSSSSTPQDSASFAPTHLDSPIRLLKMNTTDT* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g01223 250 SMART REC_2 27 151 IPR001789 GO:0000160
Pte12g01223 250 MobiDBLite consensus disorder prediction 159 250 - -
Pte12g01223 250 Gene3D - 27 208 - -
Pte12g01223 250 MobiDBLite consensus disorder prediction 159 177 - -
Pte12g01223 250 Pfam Response regulator receiver domain 29 148 IPR001789 GO:0000160
Pte12g01223 250 MobiDBLite consensus disorder prediction 185 233 - -
Pte12g01223 250 CDD REC_typeA_ARR 29 150 - -
Pte12g01223 250 SUPERFAMILY CheY-like 27 159 IPR011006 -
Pte12g01223 250 ProSiteProfiles Response regulatory domain profile. 28 155 IPR001789 GO:0000160
Pte12g01223 250 PANTHER TWO-COMPONENT RESPONSE REGULATOR 27 199 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g01223 Pte-Chr12 33646145 33648021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g01223 26 162 Response Regulator Gene Family AT1G59940 74.453 2.77e-69 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pte12g01223 Response_reg 2.1e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g01223 K14492 - cpap:110822792 236.498
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g01223 12 33646145 33648021 Pte12g01223 12 33646145 33648021 RCT