Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g01217 ATGATATTGAAAATTTTATTTTCTGGGATGAAGCTCGGCGCAACCTCAGATGACCGGAGGAGAATTGACACTACTGGTGTCATCACAAGGGTAAAGGAATTGTTTAAAGGTCATCGTGAATTAATATTGGGGTTCAATACCTTCTTGCCAAAGGGATATGAGATAACTCTTCCACCAGACGATGAACAACCTGCACAAAAGAAGCCTGTGGAATTTGAAGAAGCAATCAATTTTGTTAACAAAATTAAGACGCGGTTTCAGGGTGATGATCATGTATACAAATCATTTTTAGACATTTTGAACATGTACAGAAAGGAAAACAAATCTATTACGGAAGTCTACCAGGAGGTTGCAGCACTTTTCCAAGATCACCAGGACCTTCTTGTGGAATTTGCTCATTTTCTCCCTGACAATTCAGCATCCTCCACACGTCATGCTCAATCTGGTCGAAACTCTATCCTCCATGATAGGAGCTCCCCGATGCCCAAAATGCGGCAAATGCATGTTGACAAGAAAGATAGGACGATGACTTTGCATGCAGAAAGGGACAACAGTGTTGACCGTCCTGATCCAGACCTGGACAAAAATTTGACCAGAGAAGAGAAAGAGCAGCGAAGGCATGCTGAAAAGGAAAAGGAAAAGGATAGGAGGGAATACAGGGAGAGGAGAGAACGGGAAAGGGATGATAGGGATTATGAGCGTAATGGTAGTCGAGACTTCAATGTTCAATTCCCTCACAAGCGGAAATCTAACCATAAAGCCGATGACTATGCTGCTGAACTATCACATCCTGGTGGAGATGGCGATAAGAACTTTGCCATACGCCCTCCATCCTCCTCTGTCAATGAGAAAAGTTCTGTGAAAAGTATGTATAGCCAAGAATTTGCATTTTGTGAGAAAGTGAAGGAAAAACTACGGAATCCGGAAGATTATCAAGAATTTTTGAAGTGTCTACATATTTATAGTAGGGAAATTATAACCCGAACTGAGTTGCAGACACTGGTGGGTGATTTGTTGGGAAAGTATCCTGACCTTATGGACGGATTTAATGAATTTTTGGCACGGTGTGAAAAGAACGATGGATTTCTTTCTGGTGTCATGAGTAAAAAATCAATGTGGAGTCAAGGGTCTCATAGGACAGTGAAGGTTGAGGATAGGGACAGAGATCGAGATCATGACAGGGATGATGCTGTAAAGGAAAGAGATTGTGAAACACGGGGAAGAGACAGAATTGAAAGAAATGCTGTATATCCTAGTAAGGATGGCTCTAGTCATAGGATGTCTATGTTTTCCAGTAAGGATAAATACTTGACAAAACCCATACAAGAACTGGACCTATCCAATTGTGAGAGCTGCACTCCTAGTTATCGTCTACTTCCGAAAAATTACCCAATGCCTATGGCTAGTCAAAGAACGGATCTTGGTGCCGAAGTCCTGAATGATCATTGGGTGTCGGTGACTTCAGGAAGTGAGGATTACTCTTTTAAACACATGCGCAAAAACCAGTATGAAGAAAGCTTGTTTCGATGTGAAGATGATAGGTTTGAGCTAGATATGTTGTTAGAATCTGTGAATGTGACAACCAAGCGGGTAGAGGACTTGTTAGAGAAGATCACCAATAATACAATTAAAGCAGACGCTCCAGTTCGTATTGAAGAGCATTTCACAGCTCTAAATCTGAGGTGCATTGAGCGGCTATATGGTGACCATGGGCTTGATGTAATGGACGTGTTGAAAAAGAATGCACATCTAGCTTTGCCAGTTATATTAACCCGTCTTAAGCAAAAGCAAGAGGAGTGGTCAAAATGTCATTCTGATTTCAATAAAGTTTGGGCTGAAATATATGCTAAAAACTACCACAAATCCCTTGATCATCGTAGTTTCTACTTTAAGCAGCAAGATGCCAAGAGTTTGAGCACAAAAGCCCTGCTTTCAGAAATTAAAGAGATCAGTGATAATAAGTGCATAGATGATGATGCACTTCTGGCCGTTACTGCTGGAAATAGACGGCCTATCATTCCAAATTTGGAATTTGATTACACTGATCCTGATATTCATGAAGATTTATATCAGCTCATCAGATATTCTTGTGGGGAAGTATGTACTACAGAACAATTGGATAAAGTGATGAAGGTTTGGACAACCTTCCTTGAACCCATGCTTGGTGTTCCTCCTCATCCCCAGGGCGCAGAGGATACAGAAGATGTTGTAAAGGCCAAAAGTGCTGGAGAGAGTGATGGTAGACCTGAAGGACATGCTGTAGTCATGAATCCCGAACAATCAAATTCCCCCAGAAATGTAGACGACAATCTTCTCCCAGAACAATCAAGTTCTTCCAAGGGTTGGCACACAAATGTGGATTGCAGAAATAAAGATATTCGTCAAGATACTGATCGTAGTAGCCGCAAGAGTGAAACTGCTTGCAACAGTTTACCCCTTGGTAAAGTGGAAATTAATGGATTTACAACTGAAGTGTCAGGATTTCACAAGCAAGAACATTCTAATGAGAGGTTAGTAAATGCCAATGCATCTTTAGCCTCTGCTGTGGAGCAAAGCATTGGAAAAAATAACAAAGAAAACATATCAGGACTAGGCTTTAGTTCCTCAAGAGCAGGTATGGTCTCTGTTCAGTTTGCTCCTGAATTACCTTCATCGGAGGGTGGTGATTCTACAAAACCAACAAATGGGGTGAAGGATGATGGGACCAAAACTGGTAGGTACCAAGATGATTCTGTTGGGCATTTCAAAAGTGAAAGAGAAGAGGGTGAATTATCTCCTAATGGAGATTTTGAGGAAGATAACTTTGCAGTTTATGGGGACGGTGGCTTGGAGGGTCTACAAAAATTGGAGGCTAGCAAATACCAGGGCAGACATGGTGATGAAGTTGGCTGTGGTGAGGCCAGAGGAGAGAATGATGCTGACGCTGACGACGAGGGTGAAGAAAGTGCTCATAGATCATCAGAGGGCAGCGAAAATGCGTCTGAGAATGGAGATGTGTTTGTAAGTGAGTCTGCTGATGGTGAAGATTGTTCTCGGGAGCAGCACGAGGAGGATGGGGACCATGTGGTACATGGTAAGGCTGAGAGTGAAGGTGAAGCAGAGGGAATGGCTGATGCCAACGATGTTGAAGGGGATGGCACGTCATTATCATATTCAGAATGCTTTCTATATACCGTGAAGCCTCTGGCAAAACATGTCCCTGCAGTATCACATGAGAAAGAGAAGAATTCTAGAGTGTTTTATGGAAATGATTCCTTGTATGTTCTTTTTAGGCTCCATCAGACATTATATGAGAGAATACAATCTGCCAAGGTTAACTCTTTATCTGGTGAAAGGAAGTGGAGGACTGCAAATGATACGAGCTCTACCGACATCTATGCCAGATTTATGAGTGCCCTTTACAATTTGCTTGACGGATCATCTGATAATACAAAGTTTGAGGATGATTGTCGTGCTATTATTGGAACTCAATCATATGTCTTATTCACGTTGGACAAGTTGATATACAAACTTGTTAAACAGCTTCAATCTGTTGCCTCTGAGGAGATGGACTACAAGCTTCTCCAACTCCATTCATATGAGAAATCCAGGAAAGCTGGAAGATTTATTGACTTAGTTTATTATGAAAATGCCCGTGTTCTCCTTCATGACGAGAATATATATCGGATTGAATGTACATCTTCTCCAACCCGATTGTCTATTCAGCTTATGGACAATGGACATGACAAGCCAGAAGTTACTGCTGTGTCCATGGATCCTAATTTTTCAGCTTATCTACATAATGATTTCCTCTCACTTGTTCCCGGCAAGGAGGAGAAATCTGGGGTTTTCTTGAATAGGAACAAACGTAAATATAGTTGTGTTGATGAAATTTCAAGTGAGGCCATGGAAGGACTGCAAATTATCAATGGTCTGGAATGCAAGATAGCTTGTAATTCTTCCAAGGTTTCATATGTCTTAGATACAGAAGATTTTTTGTTTCGAACAAAAAGGAAAAGAAAAAGTTTGCGGCACAGTTCATGCCAGGAACCCTTAAAGTGTTCACAAATTTCTTCAAGAAGATTCCAGCGGTTTCAGAGATTGTTTTGCGCACCATAA 4098 0.4136 MILKILFSGMKLGATSDDRRRIDTTGVITRVKELFKGHRELILGFNTFLPKGYEITLPPDDEQPAQKKPVEFEEAINFVNKIKTRFQGDDHVYKSFLDILNMYRKENKSITEVYQEVAALFQDHQDLLVEFAHFLPDNSASSTRHAQSGRNSILHDRSSPMPKMRQMHVDKKDRTMTLHAERDNSVDRPDPDLDKNLTREEKEQRRHAEKEKEKDRREYRERRERERDDRDYERNGSRDFNVQFPHKRKSNHKADDYAAELSHPGGDGDKNFAIRPPSSSVNEKSSVKSMYSQEFAFCEKVKEKLRNPEDYQEFLKCLHIYSREIITRTELQTLVGDLLGKYPDLMDGFNEFLARCEKNDGFLSGVMSKKSMWSQGSHRTVKVEDRDRDRDHDRDDAVKERDCETRGRDRIERNAVYPSKDGSSHRMSMFSSKDKYLTKPIQELDLSNCESCTPSYRLLPKNYPMPMASQRTDLGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEDLLEKITNNTIKADAPVRIEEHFTALNLRCIERLYGDHGLDVMDVLKKNAHLALPVILTRLKQKQEEWSKCHSDFNKVWAEIYAKNYHKSLDHRSFYFKQQDAKSLSTKALLSEIKEISDNKCIDDDALLAVTAGNRRPIIPNLEFDYTDPDIHEDLYQLIRYSCGEVCTTEQLDKVMKVWTTFLEPMLGVPPHPQGAEDTEDVVKAKSAGESDGRPEGHAVVMNPEQSNSPRNVDDNLLPEQSSSSKGWHTNVDCRNKDIRQDTDRSSRKSETACNSLPLGKVEINGFTTEVSGFHKQEHSNERLVNANASLASAVEQSIGKNNKENISGLGFSSSRAGMVSVQFAPELPSSEGGDSTKPTNGVKDDGTKTGRYQDDSVGHFKSEREEGELSPNGDFEEDNFAVYGDGGLEGLQKLEASKYQGRHGDEVGCGEARGENDADADDEGEESAHRSSEGSENASENGDVFVSESADGEDCSREQHEEDGDHVVHGKAESEGEAEGMADANDVEGDGTSLSYSECFLYTVKPLAKHVPAVSHEKEKNSRVFYGNDSLYVLFRLHQTLYERIQSAKVNSLSGERKWRTANDTSSTDIYARFMSALYNLLDGSSDNTKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQSVASEEMDYKLLQLHSYEKSRKAGRFIDLVYYENARVLLHDENIYRIECTSSPTRLSIQLMDNGHDKPEVTAVSMDPNFSAYLHNDFLSLVPGKEEKSGVFLNRNKRKYSCVDEISSEAMEGLQIINGLECKIACNSSKVSYVLDTEDFLFRTKRKRKSLRHSSCQEPLKCSQISSRRFQRFQRLFCAP* 1366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g01217 1365 MobiDBLite consensus disorder prediction 957 1044 - -
Pte12g01217 1365 SUPERFAMILY PAH2 domain 290 356 IPR036600 GO:0006355
Pte12g01217 1365 MobiDBLite consensus disorder prediction 161 263 - -
Pte12g01217 1365 Pfam C-terminal domain of Sin3a protein 1080 1326 IPR031693 -
Pte12g01217 1365 MobiDBLite consensus disorder prediction 1005 1033 - -
Pte12g01217 1365 MobiDBLite consensus disorder prediction 902 924 - -
Pte12g01217 1365 ProSiteProfiles PAH domain profile. 68 138 IPR003822 GO:0006355
Pte12g01217 1365 PANTHER SIN3B-RELATED 20 1224 IPR039774 GO:0003714
Pte12g01217 1365 Gene3D Paired amphipathic helix 285 358 IPR036600 GO:0006355
Pte12g01217 1365 MobiDBLite consensus disorder prediction 139 285 - -
Pte12g01217 1365 SUPERFAMILY PAH2 domain 15 51 IPR036600 GO:0006355
Pte12g01217 1365 ProSiteProfiles PAH domain profile. 287 356 IPR003822 GO:0006355
Pte12g01217 1365 MobiDBLite consensus disorder prediction 731 747 - -
Pte12g01217 1365 FunFam Paired amphipathic helix SIN3-like protein 67 138 - -
Pte12g01217 1365 Gene3D Paired amphipathic helix 4 50 IPR036600 GO:0006355
Pte12g01217 1365 MobiDBLite consensus disorder prediction 379 405 - -
Pte12g01217 1365 MobiDBLite consensus disorder prediction 756 784 - -
Pte12g01217 1365 SUPERFAMILY PAH2 domain 66 137 IPR036600 GO:0006355
Pte12g01217 1365 MobiDBLite consensus disorder prediction 785 803 - -
Pte12g01217 1365 Gene3D Paired amphipathic helix 66 139 IPR036600 GO:0006355
Pte12g01217 1365 ProSiteProfiles PAH domain profile. 1 52 IPR003822 GO:0006355
Pte12g01217 1365 Pfam Sin3 family co-repressor 451 542 IPR013194 -
Pte12g01217 1365 MobiDBLite consensus disorder prediction 721 808 - -
Pte12g01217 1365 FunFam Paired amphipathic helix protein SIN3 284 358 - -
Pte12g01217 1365 Pfam Paired amphipathic helix repeat 309 353 IPR003822 GO:0006355
Pte12g01217 1365 Pfam Paired amphipathic helix repeat 91 135 IPR003822 GO:0006355
Pte12g01217 1365 Pfam Paired amphipathic helix repeat 21 49 IPR003822 GO:0006355
Pte12g01217 1365 Coils Coil 198 229 - -
Pte12g01217 1365 MobiDBLite consensus disorder prediction 880 938 - -
Pte12g01217 1365 SMART hdac_interact2seq4b 448 548 IPR013194 -
Pte12g01217 1365 MobiDBLite consensus disorder prediction 139 155 - -
Pte12g01217 1365 MobiDBLite consensus disorder prediction 374 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g01217 Pte-Chr12 33525620 33534999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g01217 22 87 WRKY Transcription Factor Family AT4G12020 43.939 2.57e-10 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pte12g01217 Sin3a_C 1.9e-57 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g01217 K11644 - zju:107428768 1920.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g01217 12 33525620 33534999 Pte12g01217 12 33525620 33534999 RCT