Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g01206 ATGGATCCGAGTACAATGATGAATGAAGGGTCGTTGCAAATGGCGTTTGCAATGGAAGGCCTTACAACATGGCAGAGATCTGGCAGTTTCAATAACTCGAGCCAGTTCTGTGTGGAATATCTGGGTACGAGTAGGTGCATTTCGAATCATCCGATGGGTTCGGCGCAGACAGTGAACAAACGTGGTGTCAACACGAGGAAAAGACGTGAAAAGGAGGATGAATCAAACAGTCTTGCCTCCACTAGTAATGGTGGCAGTACTCCGAATGATTGCGAAGTAAAAAGGTTGAAAGCATCAGCATGCAATAATGATAATGATAATCGTGAAAGCAAATGTGAAGCAGAACCTAGTTCGGAGAAGCAAATGGAACAAAGAACCAAGCCACCACTTGAGCCTCCTAAAGATTATATTCATGTACGAGCAAGACGGGGTCAAGCAACCGATAGCCATAGTTTGGCAGAAAGAGCTAGGAGGGAAAAGATAAGTGAGAGAATGAAAATTCTTCAGGACTTGGTTCCAGGATGTAACAGGGTTATTGGGAAAGCTCTTGTCCTGGATGAGATAATTAATTACATCCAATCATTACAGCGCCAGGTTGAGTTCCTGTCCATGAAGCTCGAAGCAGTTAATGCAATGCTAGAATAG 645 0.4388 MDPSTMMNEGSLQMAFAMEGLTTWQRSGSFNNSSQFCVEYLGTSRCISNHPMGSAQTVNKRGVNTRKRREKEDESNSLASTSNGGSTPNDCEVKRLKASACNNDNDNRESKCEAEPSSEKQMEQRTKPPLEPPKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNRVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNAMLE* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g01206 214 MobiDBLite consensus disorder prediction 97 134 - -
Pte12g01206 214 CDD bHLH_AtBPE_like 135 214 - -
Pte12g01206 214 MobiDBLite consensus disorder prediction 48 134 - -
Pte12g01206 214 Coils Coil 192 212 - -
Pte12g01206 214 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 143 212 IPR036638 GO:0046983
Pte12g01206 214 FunFam Basic helix-loop-helix transcription factor 142 214 - -
Pte12g01206 214 Pfam Helix-loop-helix DNA-binding domain 149 196 IPR011598 GO:0046983
Pte12g01206 214 SMART finulus 151 201 IPR011598 GO:0046983
Pte12g01206 214 Gene3D - 142 214 IPR036638 GO:0046983
Pte12g01206 214 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 145 195 IPR011598 GO:0046983
Pte12g01206 214 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 49 212 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g01206 Pte-Chr12 33146641 33150157 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g01206 1 211 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 55.455 1.55e-56 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte12g01206 HLH 2.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g01206 - - cave:132178734 219.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g01206 12 33146641 33150157 Pte12g01206 12 33146641 33150157 RCT