Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g01190 ATGAGTCGTAAGCGAGACAAACCCTACTTCTCCCGCCACGCGCCTCTATCTGCCGCCAAAAAGCAGCGTACGTTACCGCTATGCGTCACCGTCGAAGAAACCGATAACAAGCCCACTGCTAAGCCAGCACCCCCACCGGCTGTGGTGGTCATGGGTCTACCTATGGACTGCTCCGTGCTTGACCTTAAGTCCCGATTCGAGATCTATGGCTCCATCTCTCGTATTCGCATTGACCTTGATGCAGTTGGTTACATTAATTTTCGATCCAAGGAGTCAGCAGATGCTGCCATTGCCGCTGGCCTTGACCCGTCGTTCGGTATCACAATTCATTCCGAAAGGGTGCAAGTCTTGTGGGCTACTGATCCTCTAGCACAATGGAGAGAAGGAATTGGTAATAAGGATAAGGGGTCTTCATCTAAGTTATTGCGTTCAGAGTTACCATTACGTAGACATGGAAGAAGTAATAAACTCGCCTCCGCCATAGTATCCCCCAAAGGTAAAGCTGATGATGCCAGCTCAAGGCTAAACGTGCCTTTCAGGGGCAGAGAAATCATAGCTTATGATGATATCCTGTAA 576 0.4931 MSRKRDKPYFSRHAPLSAAKKQRTLPLCVTVEETDNKPTAKPAPPPAVVVMGLPMDCSVLDLKSRFEIYGSISRIRIDLDAVGYINFRSKESADAAIAAGLDPSFGITIHSERVQVLWATDPLAQWREGIGNKDKGSSSKLLRSELPLRRHGRSNKLASAIVSPKGKADDASSRLNVPFRGREIIAYDDIL* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g01190 191 CDD RRM_SF 52 116 - -
Pte12g01190 191 SMART rrm1_1 47 117 IPR000504 GO:0003723
Pte12g01190 191 Gene3D - 28 158 IPR012677 -
Pte12g01190 191 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 121 IPR000504 GO:0003723
Pte12g01190 191 PANTHER GEO13361P1-RELATED 9 176 - -
Pte12g01190 191 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 98 IPR000504 GO:0003723
Pte12g01190 191 SUPERFAMILY RNA-binding domain, RBD 38 128 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g01190 Pte-Chr12 32267599 32268520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g01190 1 192 Homeobox Transcription Factor Family AT1G27050 52.427 8.46e-63 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g01190 - - zju:107428806 265.003