Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g01185 ATGGATGAAGACACTTACCTCCTCCCACCAGATACAGATCTAGACCTCAGCTTCACAAGCTGTAATTCCATTGCCACCGACCGCACCTTCGCCTCCTCAAGTGCTCGTAGCAGTTTAGCTCGAAGTAGTTTAACTCTTAGCTTCAATGAGTCTAGACTCTCTACAACTTCCACAACCAATACAACCTCTTCCACAGTTTACAGCAGGCCTCACCGTAACTCTGACCCTCAATGGTCAGCCATCAAAGCAGCGACCACACTTTCCTCTGATGGCAAACTCCACCTCCACCATCTCAAACTTCTTCGTCATCTCGGTACCGGGAACCTTGGCCGAGTCTTCCTTTGCCGACTTAGAGACTCCAACCATGCCAACTTTGCTCTCAAAGTAGTAGACAGAGACTTGCTTAGCAACAAGAAGCTCTCACATGTGCGAACGGAAGCCGAGATTCTCTGCATGCTCGACCACCCTTTTCTTCCAACGCTCTATGCTCACCTTGAGGTTTCACACTACACATGTCTCTTGATTGATTACTGTCCCGGCGGAGACCTCCACCATCTTCTCCGCAGACAACCCGGTTACCGGTTGCCTGTTCAAGCAGTTCGGTTCTTCGCCGCGGAGGTGTTAGTAGCCTTAGAGTACTTACATGCACTTGGGATTGTTTACAGAGATCTAAAGCCTGAAAACGTTTTGCTCCGTGAAGATGGTCACATCATGTTATCAGATTTCGATTTGTGTTTCAAAGCTGATGTTATCCCTACATTTGAAACAAGGGTTCACAGTAGCAAAGATCAGTTTAGACGTGCATTGAGTTTAAGTAGTTATTCATCAAAAGGTTCTTCTAGTAGCAAAATTTTCAAGAAGACGAAGAAGATGAGAGTGAAGACAGTGAAGGAAACGATTGCAGCGGAGTTTGTAGCGGAGCCAACGGAGGCTTTCTCAAGATCTTGTGTCGGTACACACGAGTACTTGGCGCCTGAGGTAGTCACCGGCAATGGTCACGGTAATGGTGTAGACTGGTGGGCCTTTGGTATATTGATATACGAGCTGTTGTACGGAACGACACCCTTTAAAGGAGGGAGCAAAGAGAGTACGCTTAGAAATATAGCATCAGCAAAGGATGTGATATTCGATACCGCAGATGGAGAAGAAGGAGGAGGAATGGCTAAAGCGAAGGATTTGATAGAGAAGCTGCTGGTGAAAGACGCAAGAAGAAGACTAGGGTGCACTAGGGGTGCTACTGAAATCAAAAGGCACCCATTTTTTGCTGGGATCAATTGGCCATTGATTCGCACCTACAGACCACCAGAACAGGTTAGTGGGCTTTTGAGAAAAGGGAAGAACCATATGAGTTCTTCAGGGGTTTCTCAGAAGAGAAGGCGATGGTGGTGGAAGAGACTTGGTTACTTGGTAAAAAGCAAAGGGGCCAATAAGAATATTTCATTTTCCAGTCATATTAATAGTAATTACTATCATTATGTCAATAGTTATAAGGTTAGGGTTTAA 1503 0.4571 MDEDTYLLPPDTDLDLSFTSCNSIATDRTFASSSARSSLARSSLTLSFNESRLSTTSTTNTTSSTVYSRPHRNSDPQWSAIKAATTLSSDGKLHLHHLKLLRHLGTGNLGRVFLCRLRDSNHANFALKVVDRDLLSNKKLSHVRTEAEILCMLDHPFLPTLYAHLEVSHYTCLLIDYCPGGDLHHLLRRQPGYRLPVQAVRFFAAEVLVALEYLHALGIVYRDLKPENVLLREDGHIMLSDFDLCFKADVIPTFETRVHSSKDQFRRALSLSSYSSKGSSSSKIFKKTKKMRVKTVKETIAAEFVAEPTEAFSRSCVGTHEYLAPEVVTGNGHGNGVDWWAFGILIYELLYGTTPFKGGSKESTLRNIASAKDVIFDTADGEEGGGMAKAKDLIEKLLVKDARRRLGCTRGATEIKRHPFFAGINWPLIRTYRPPEQVSGLLRKGKNHMSSSGVSQKRRRWWWKRLGYLVKSKGANKNISFSSHINSNYYHYVNSYKVRV* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g01185 500 FunFam Serine/threonine-protein kinase OXI1 311 439 - -
Pte12g01185 500 SMART serkin_6 98 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte12g01185 500 ProSiteProfiles Protein kinase domain profile. 98 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte12g01185 500 PANTHER FLIPPASE KINASE 1-RELATED 41 439 - -
Pte12g01185 500 FunFam Serine/threonine-protein kinase OXI1 182 250 - -
Pte12g01185 500 Gene3D Transferase(Phosphotransferase) domain 1 182 248 - -
Pte12g01185 500 FunFam Serine/Threonine Kinase 96 182 - -
Pte12g01185 500 Pfam Protein kinase domain 100 250 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte12g01185 500 Pfam Protein kinase domain 310 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte12g01185 500 CDD STKc_phototropin_like 105 436 - -
Pte12g01185 500 Gene3D Transferase(Phosphotransferase) domain 1 313 432 - -
Pte12g01185 500 Gene3D Phosphorylase Kinase; domain 1 96 181 - -
Pte12g01185 500 SUPERFAMILY Protein kinase-like (PK-like) 76 436 IPR011009 -
Pte12g01185 500 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g01185 Pte-Chr12 32162425 32164168 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g01185 3 499 AGC Kinase Gene Family AT3G14370 63.043 0.0 573
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Pte12g01185 Pkinase 1.7e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g01185 - - jre:108981899 649.818