Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g01183 ATGGGAGTAAGTGCTGAGAATGGAAAAATGGAATCATGGGATGTGAGCAAATTAAAGGAAGGGAAGAAACAGCAACAAAAGAATGTACATACAGTTATGGAAGAGGAGGAGTCTGGATGCTGGATTAGGTTGAGGCTCTTTGGTAGCTGCATTTCGTCAAGATCCAAGGTTGATAGCTCAATTAGCGGCACCAGTACTCATGATGCTGAGAGTAAATCGACCAATGACACTAGTAGAGACCAGCCAGCGGCTCCAGTAGAATCTACTTCAACCACAAGTAATGCTGAAAGTAACTCATCTACTTCAAAGCTTGAGGAGGAACTTAAAGTTTCTTCACGTCTAAGGAAATTTGCATTCAATGATCTCAAGATGGCTACAAGAAATTTTAGGCCAGAAAGCCTTCTTGGTGAAGGCGGTTTTGGTTGTGTGTTCAAGGGATGGATTGAAGAAAATGGAACTGCTCCAGTAAAACCTGGTACAGGGCTTACTGTTGCCGTGAAAACCCTCAACCATGATGGTCTTCAGGGACATAAAGAATGGCTGGCTGAAGTGAGTTTTCTTGGCGATCTAATTCATGCAAACCTAGTTAAACTTATTGGCTACTGTATCGAAGATGATCAAAGGTTACTAGTGTATGAGTTCATGCCCCGTGGAAGCTTGGAGAATCACCTATTTCGTAGGTCCCTCCCTCTTCCTTGGTCCATTAGGATGAAGATTGCACTAGGAGCTGCAAAAGGTCTTACTTTTCTTCATGAAGAAGCAAAAAGGCCAGTGATTTATCGGGATTTCAAAACATCCAACATTCTATTAGATGCAGATTATAATGCCAAGCTTTCGGATTTTGGACTTGCAAAAGATGGTCCGGAGGGTGATAAGACTCATGTCTCAACCCGTGTAATGGGAACATATGGTTATGCCGCTCCAGAATACGTCATGACAGGACATCTTACTTCAAAGAGTGATGTGTATAGTTTTGGGGTGGTATTGCTTGAGATGTTGACTGGCAGGAGGTCCATGGACAAAAACCGACCTAATGGGGAGCATAACCTTGTGGAATGGGCCAGACCATATCTGGGAGAGAGGAGGAGGTTCTACCGTTTAATCGATCCTCGGCTGGAAGGTCACTTTTCCATAAGAGGTGCCCAGAAAGCTGCACAGCTTGCTGCTCATTGCCTTAGTCGCGATCCCAAAGCCAGGCCTCTCATGAGTGAAGTTGTAGAAGCTTTGAAGCCTCTGATAAATCTTAAGGACATGGCAAGCTCTTCATATTATTTTCAGACCATGCAAGCTGAGCGATTTAAGGCCAGCCCCAATTCTAGAAATGGAAGGATACAGATTGGAATGATTCCTAGGAATGGGCAGCAGCAAAGGGTCCTTTCCTTGCCAAATGGCTCTCATCCTTCTCCTTATCACCATCAGTATCCTCAACAATCGCCAAAACCTAATGGGAAAGCATAG 1458 0.4417 MGVSAENGKMESWDVSKLKEGKKQQQKNVHTVMEEEESGCWIRLRLFGSCISSRSKVDSSISGTSTHDAESKSTNDTSRDQPAAPVESTSTTSNAESNSSTSKLEEELKVSSRLRKFAFNDLKMATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAEVSFLGDLIHANLVKLIGYCIEDDQRLLVYEFMPRGSLENHLFRRSLPLPWSIRMKIALGAAKGLTFLHEEAKRPVIYRDFKTSNILLDADYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPYLGERRRFYRLIDPRLEGHFSIRGAQKAAQLAAHCLSRDPKARPLMSEVVEALKPLINLKDMASSSYYFQTMQAERFKASPNSRNGRIQIGMIPRNGQQQRVLSLPNGSHPSPYHHQYPQQSPKPNGKA* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g01183 485 ProSiteProfiles Protein kinase domain profile. 129 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte12g01183 485 CDD STKc_IRAK 135 412 - -
Pte12g01183 485 Pfam Protein tyrosine and serine/threonine kinase 133 409 IPR001245 GO:0004672|GO:0006468
Pte12g01183 485 ProSitePatterns Serine/Threonine protein kinases active-site signature. 258 270 IPR008271 GO:0004672|GO:0006468
Pte12g01183 485 MobiDBLite consensus disorder prediction 458 485 - -
Pte12g01183 485 MobiDBLite consensus disorder prediction 55 105 - -
Pte12g01183 485 FunFam Probable serine/threonine-protein kinase PBL8 215 430 - -
Pte12g01183 485 Gene3D Phosphorylase Kinase; domain 1 103 214 - -
Pte12g01183 485 ProSitePatterns Protein kinases ATP-binding region signature. 135 167 IPR017441 GO:0005524
Pte12g01183 485 MobiDBLite consensus disorder prediction 1 34 - -
Pte12g01183 485 MobiDBLite consensus disorder prediction 12 34 - -
Pte12g01183 485 MobiDBLite consensus disorder prediction 55 101 - -
Pte12g01183 485 PANTHER OS01G0588500 PROTEIN-RELATED 90 412 - -
Pte12g01183 485 Gene3D Transferase(Phosphotransferase) domain 1 215 431 - -
Pte12g01183 485 FunFam Serine/threonine-protein kinase BIK1 96 214 - -
Pte12g01183 485 SUPERFAMILY Protein kinase-like (PK-like) 115 432 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g01183 Pte-Chr12 32039330 32044973 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g01183 77 409 Glycoside Hydrolase AT3G07070 54.167 7.90e-119 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Pte12g01183 PK_Tyr_Ser-Thr 2.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g01183 - - qsa:O6P43_025413 857.055