Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g01179 ATGAACAGCACAAGGAGGGGCCTCGGTAATAAGGGTAAGAAGGGAGAAGGGCCATGCAAGGCTGCCAACCCCATTGACAAATGTTGGAGATGTGACCCTGAGTGGGCTGACAACCGCAAGAAATTGGCAGATTGTGCACAAGGGTTTGGACGGAAAGCTACCGGAGGCAAAAATGGGCGGTTCTACGTTGTAACTGATCCTTCAGACGATGACCTACTCAACCCTAGGCCAGGTACGCTCAGACATGCAGTCATCCAGAAGGAGCCACTGTGGATCACCTTCGCACGCAGCATGATCATCACTCTTCAGCAGGAACTCATCATGACTGGTAACAAAACCATTGATGGTAGAGGGGCTAACGTACACATTTCCGGTGGGGCTGGTATCACCATCCAGTTCATCAGCAATGTCATTATCCACAACATTCACATCCATGATATTGTTCCTAAAGAGGGTGGTATGATTAGAGATTCAACAGATCATTTTGGTCAAAGAACCAGGAGTGATGGTGATGGGATCTCAATCTTTGGTGCCAGTAATATTTGGATTGACCACAATTCCATGTATAAATGTACGGATGGTCTCATTGACATCATCCAGGCTTCCACTGGTATCACCATCTCTAACAACCACTTCACCGATCATAATGAGGCTATGCTATTTGGTGCAAATGATGTGTACAAGCTTGATAAGATTATGCAGGTGACTGTAGCATTCAACCACTTTGGTAAAGGATTAGTGCAGAGAATGCCAAGGTGCAGATTTGGTTTCTTCCATATTGTGAACAACGATTACACTCACTGGCTCATGTACGCCATTGGAGGAAGCCAAAACCCTACCATCATCAGTGAAGGTAACAGATTCATTGCTACTCATAGTCCTTATGCCAAAGAGGTTACCAAGAGGGAGTACACAGAACAAAGTGTATGGAAGGATTGGCAATGGAAATCGATCGATGATGAGTTTATCAATGGAGCATTCTTTGTGGAGTCTGGGCCTGAGCTGCGTGAGAAGCCATTCTCAAAGCTTGACATGATCCCTGCTACGAAAGGCGTAGCTGTAAGTACACTCACTCGGGAAGCTGGAACCCTCAATTGTCTTAATACTAATATTTTAATTCTTCCTTTATGTTTCTATTTGACTTTGTTTCCCAGTTTGAATGCTGCGGAGCATCATGATAATGTTTCTGCAACTATTGATCCTGAAGATGGATACTGGGATGCGAGAGATAAGCAAGCTCAGGAACTTAACCAAAAATATTTTGACCCAAATCCCTATAATGTTTCTGACGACATTCGTTCCAATGTTGTGCAGTACGTAGTTCTAATTATATATCTTATATCTTATATGATCTACTGCATGCATGGAGAAGGACCATGCCAAGCTAACAACCCCATCGACAAATGTTGGAGGTGTGACCCTAAATGGGCTGACAACCGCAAGAAATTGGCAGCTTGCGCCCAAGGGTTTGGCCGGAAAGCAACAGGCGGCAAAGATGGGCGTTTCTACGTTGTTACTGATCCTTCAGACGATGACCTGCTCAACCCTAGGCCAGGTACTCTCAGACATGCAGTCATCCAGAAGGAGCCACTGTGGATCACCTTCGCACGCAGCATGATCATCACTCTTCAGCAGGAACTCATCATGACTAGTAATAAAACCATCGATGGTAGAGGGGCTAATGTTCACATTTCTGGTGGGGCTGGTATCACCATCCAGGCTATCAGCAATGTCATCATCCACAACATTCACATCCATGACATTGTTGCTAAAGAGGGTGGTATGATTAGAGATTCAGTTGATCATTTTGGTCAAAGAACCAGGAGCGATGGTGATGGGATCTCAATCTTTGGTTCCAGCAATATCTGGATTGACCACAATTCCATGTATAAATGTACGGATGGTCTCATTGACATCATCCAGGCTTCCACTGGTATCACCATCTCAAACAACCACTTCACCAATCACAACGAGGCTATGCTATTCGGTGCGCATGATGACTTCGAGGATGATAAGATTATGCAGGTGACTGTAGCATTCAACCACTTTGGTAAAGGATTAGTGCAGAGAATGCCGAGGTGCAGATTTGGTTTCTTCCATGTTCTGAACAACGATTACACTCACTGGCTCATGTACGCCATTGGAGGAAGCCAAAACCCTACCATCATCAGTGAAGGTAACAGATTCATTGCCACCTCAAGTGCCTATTCAAAAGAGGTCACCAAGAGAGAGTATACACCAGAAAACGTATGGAAGCATTGGCAGTGGAGATCGATCAATGATGAGTTTGTCAATGGAGCAGTCTTCGTCCAGTCTGGGCCTGAGCTGCATCAGAAGCCATTCTCAAAGCTTGATATGATCCCTGCTACGAAAGGCATACCTGTCAGTACAATCACTCGGGAAGCTGGCACTCTCAATTGCCATCCTGGAAAACCTTGGCCATGCCAGGTTGCCAACCCAATTGACAGATGTTGGAGGTGTGACCCTAAGTGGGCTGACAACCGCAAGAAATTGGCAGATTGCGCCCAGGGCTTTGGCCGGAGAGCCACAGGCGGCAAAGATGGGCGGTTCTACGTTGTAACTGATCCTTCAGACGATGACCTCATTAACCCTAAACCAGGTACTCTCAGACATGCAGTCATCCAGAAGGAGCCACTGTGGATCACCTTTGCACGTAGCATGATCATCACTCTTAAGCAGGAACTCATAATGACTGGTAACAAAACCATTGATGGTAGAGGGGCTAATGTTCACATTTCCGGTGGGGCTGGTATCACCATCCAGGCCATCAGCAATGTCATCATCCACAACGTTCACATCCATGATATTGTTCCTAAAGAGGGTGGTATGATTAGAGATTCAGTAGATCATTTCGGTCAACGAACTAGGAGCGATGGTGACGGGATCTCAATCTTTAGTTCCAGCAACATTTGGATTGACCACAATTCCATGTATAAATGTACTGATGGTATCATTGACATCATCCAGGCTTCCACTGGTATCACTATCTCTAACAACCACTTTACCCATCACGATGAGGTTATGCTATTCGGCGCTCATAATGATTTCGAGGATGATAAGATCATGCAGGTGACTGTAGCATTCAACCACTTCGGTAAAGGATTAGTGCAGAGAATGCCAAGGTGCAGATTTGGTTTCTTCCATGTTCTGAACAACGATTACACTCACTGGCGCATGTACGCCATTGGAGGAAGCCAAAACCCTACAATCATCAGTGAAGGTAACAGATTTATTGCCCAATCAAATGCCCATACTAAAGAGATCACCAAGAGATTGTACGCACCTCAAAATGTGTGGAAGAATTGGCAGTGGAGATCGATCGATGATGAATTTATCAATGGAGCAGTCTTCGTGCAGTCTGGGCCTGAGCTGCGTGAGAAGCCATTCTCAAAGCTTGACATGATCCCTGCTACGAAAGGCAAAGCTGTGAGTGCACTCACTCGGGAAGCTGGCACCCTAAATTGTCGTCCTGGCAAACCTTGTTAG 3507 0.4562 MNSTRRGLGNKGKKGEGPCKAANPIDKCWRCDPEWADNRKKLADCAQGFGRKATGGKNGRFYVVTDPSDDDLLNPRPGTLRHAVIQKEPLWITFARSMIITLQQELIMTGNKTIDGRGANVHISGGAGITIQFISNVIIHNIHIHDIVPKEGGMIRDSTDHFGQRTRSDGDGISIFGASNIWIDHNSMYKCTDGLIDIIQASTGITISNNHFTDHNEAMLFGANDVYKLDKIMQVTVAFNHFGKGLVQRMPRCRFGFFHIVNNDYTHWLMYAIGGSQNPTIISEGNRFIATHSPYAKEVTKREYTEQSVWKDWQWKSIDDEFINGAFFVESGPELREKPFSKLDMIPATKGVAVSTLTREAGTLNCLNTNILILPLCFYLTLFPSLNAAEHHDNVSATIDPEDGYWDARDKQAQELNQKYFDPNPYNVSDDIRSNVVQYVVLIIYLISYMIYCMHGEGPCQANNPIDKCWRCDPKWADNRKKLAACAQGFGRKATGGKDGRFYVVTDPSDDDLLNPRPGTLRHAVIQKEPLWITFARSMIITLQQELIMTSNKTIDGRGANVHISGGAGITIQAISNVIIHNIHIHDIVAKEGGMIRDSVDHFGQRTRSDGDGISIFGSSNIWIDHNSMYKCTDGLIDIIQASTGITISNNHFTNHNEAMLFGAHDDFEDDKIMQVTVAFNHFGKGLVQRMPRCRFGFFHVLNNDYTHWLMYAIGGSQNPTIISEGNRFIATSSAYSKEVTKREYTPENVWKHWQWRSINDEFVNGAVFVQSGPELHQKPFSKLDMIPATKGIPVSTITREAGTLNCHPGKPWPCQVANPIDRCWRCDPKWADNRKKLADCAQGFGRRATGGKDGRFYVVTDPSDDDLINPKPGTLRHAVIQKEPLWITFARSMIITLKQELIMTGNKTIDGRGANVHISGGAGITIQAISNVIIHNVHIHDIVPKEGGMIRDSVDHFGQRTRSDGDGISIFSSSNIWIDHNSMYKCTDGIIDIIQASTGITISNNHFTHHDEVMLFGAHNDFEDDKIMQVTVAFNHFGKGLVQRMPRCRFGFFHVLNNDYTHWRMYAIGGSQNPTIISEGNRFIAQSNAHTKEITKRLYAPQNVWKNWQWRSIDDEFINGAVFVQSGPELREKPFSKLDMIPATKGKAVSALTREAGTLNCRPGKPC* 1169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g01179 1168 SMART pbh1 575 618 IPR006626 -
Pte12g01179 1168 SMART pbh1 134 177 IPR006626 -
Pte12g01179 1168 SMART pbh1 899 921 IPR006626 -
Pte12g01179 1168 SMART pbh1 544 566 IPR006626 -
Pte12g01179 1168 SMART pbh1 202 223 IPR006626 -
Pte12g01179 1168 SMART pbh1 930 973 IPR006626 -
Pte12g01179 1168 SMART pbh1 103 125 IPR006626 -
Pte12g01179 1168 SMART pbh1 178 200 IPR006626 -
Pte12g01179 1168 SMART pbh1 619 641 IPR006626 -
Pte12g01179 1168 SMART pbh1 643 664 IPR006626 -
Pte12g01179 1168 SMART pbh1 974 1005 IPR006626 -
Pte12g01179 1168 Gene3D - 818 1161 IPR012334 -
Pte12g01179 1168 Gene3D - 463 806 IPR012334 -
Pte12g01179 1168 Gene3D - 22 365 IPR012334 -
Pte12g01179 1168 SMART amb_all 538 735 IPR002022 -
Pte12g01179 1168 SMART amb_all 97 294 IPR002022 -
Pte12g01179 1168 SMART amb_all 893 1090 IPR002022 -
Pte12g01179 1168 SUPERFAMILY Pectin lyase-like 464 803 IPR011050 -
Pte12g01179 1168 PRINTS Pollen allergen Amb family signature 271 290 IPR018082 -
Pte12g01179 1168 PRINTS Pollen allergen Amb family signature 313 337 IPR018082 -
Pte12g01179 1168 PRINTS Pollen allergen Amb family signature 69 94 IPR018082 -
Pte12g01179 1168 PRINTS Pollen allergen Amb family signature 169 190 IPR018082 -
Pte12g01179 1168 PRINTS Pollen allergen Amb family signature 249 268 IPR018082 -
Pte12g01179 1168 PRINTS Pollen allergen Amb family signature 105 121 IPR018082 -
Pte12g01179 1168 PRINTS Pollen allergen Amb family signature 343 366 IPR018082 -
Pte12g01179 1168 PRINTS Pollen allergen Amb family signature 45 62 IPR018082 -
Pte12g01179 1168 SUPERFAMILY Pectin lyase-like 819 1159 IPR011050 -
Pte12g01179 1168 SUPERFAMILY Pectin lyase-like 23 363 IPR011050 -
Pte12g01179 1168 Pfam Pectate lyase 901 1084 IPR002022 -
Pte12g01179 1168 Pfam Pectate lyase 108 288 IPR002022 -
Pte12g01179 1168 Pfam Pectate lyase 547 729 IPR002022 -
Pte12g01179 1168 PANTHER PECTATE LYASE 18-RELATED 418 811 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g01179 Pte-Chr12 31892634 31987501 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g01179 457 811 Polysaccharide Lyase AT5G15110 63.483 1.03e-158 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g01179 K01728 - gmx:100798579 539.265