Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g01133 ATGGATGATGTAAGTAATAATATAGATGATGAACATGAGAAACTGGATGAGTTCATGTTACCAGGGTTTAGGTTTCATCCAACTGATGAAGAGCTTGTAGGGTTTTATCTCAAGAGGAAGATTCAGCAGCGGCCTCTCTCTGTTGAGCTCATCAAGCAACTAGATATCTACAAATACGATCCATGGGATCTTCCAAAGTTGGCGACGGGTGGGGAGAAAGAGTGGTATTTCTTCTGCCCTAGAGATAGAAAATACAGAAACAGTGCAAGGCCAAACCGAGTGACTGGTGGTGGTTTCTGGAAAGCCACAGGGACGGACAGACCTATCTACTCTTCCGCAGAAGGTTCCAAATGCATTGGCTTGAAGAAATCACTTGTGTTCTACAAAGGTAGAGCTGCCAAAGGTGTCAAAACTGATTGGATGATGCATGAGTTCCGGCTTCCTTCCCTAACAGACTCATCACCAAACAAGTACATGGACAAACGCATAGCTGCTAATGACTCATGGGCTATATGCAGAATATTCAAGAAAACAAGTTCTAGTGCTCACAGGGCATTATCTCACTCTTGGGTATCACCACAGCTTCCTGAAACAATTACATCCCATGTGCTGACCAAAGACACAAACTATGCTCAGTTTTGCTCAAGGAGTATGCCACCATTGACAGAGAAGGCCTGCTCAGTCTTCCAGTTTTGTGGTGGCAATAATAACTATACACAACATTCATTAATGGCTAATAACTTTTCTCCTGCAGATGCTGCCACCTACAAACCACTTATAAACCCATTGCCGTACAAGCCTCTGGATCAAAGTTCAATTCCAAATACCTTCCTATTTCCATCACCTCTGGAAACATCAACAAGTTCTAATTCTAACACTAGCAAATCAACCAACATTGATGTTTCTTCTCTGCTGTTAAACATGTCATCCTCAGTGTTTGGAGATTTTGCTGGCAAGTGTTCCAGCTCAGAGAGTGAGTTTGGTAGATCAGAAGAACAACGCATGAATAGCTTCCTAACCTCTTTATATGAAATTCAAGGGACTTTGGACAGTGATGGAGATCATAGCAGTGAATTGATGAAGAATATTCCAAACATGAATGTGCATCAACACATAGATGATCGTCTGGGAACGGCAGTCCGATCCAGCAGTGCTGGATTTCCCTTCACCTGGCCTTTGAATATTGGAGATGCATGGAAGTCAAACTTACTTTGGGATGCTTCCTCCTGCCCTAGTGAAATGTCTTCCTCATCAAGTCACTCAGTAACCAAGTGCTACACATGA 1284 0.4283 MDDVSNNIDDEHEKLDEFMLPGFRFHPTDEELVGFYLKRKIQQRPLSVELIKQLDIYKYDPWDLPKLATGGEKEWYFFCPRDRKYRNSARPNRVTGGGFWKATGTDRPIYSSAEGSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRLPSLTDSSPNKYMDKRIAANDSWAICRIFKKTSSSAHRALSHSWVSPQLPETITSHVLTKDTNYAQFCSRSMPPLTEKACSVFQFCGGNNNYTQHSLMANNFSPADAATYKPLINPLPYKPLDQSSIPNTFLFPSPLETSTSSNSNTSKSTNIDVSSLLLNMSSSVFGDFAGKCSSSESEFGRSEEQRMNSFLTSLYEIQGTLDSDGDHSSELMKNIPNMNVHQHIDDRLGTAVRSSSAGFPFTWPLNIGDAWKSNLLWDASSCPSEMSSSSSHSVTKCYT* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g01133 427 Pfam No apical meristem (NAM) protein 21 147 IPR003441 GO:0003677|GO:0006355
Pte12g01133 427 ProSiteProfiles NAC domain profile. 19 177 IPR003441 GO:0003677|GO:0006355
Pte12g01133 427 Gene3D NAC domain 28 181 IPR036093 GO:0003677|GO:0006355
Pte12g01133 427 FunFam NAC domain-containing protein 35 28 180 - -
Pte12g01133 427 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 18 286 - -
Pte12g01133 427 SUPERFAMILY NAC domain 19 177 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g01133 Pte-Chr12 30296484 30298321 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g01133 1 317 NAC Transcription Factor Family AT1G26870 53.939 4.37e-103 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte12g01133 NAM 6.6e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g01133 - - qsa:O6P43_025458 449.899