Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g01128 ATGGACCTCGCCATCCTCGGCAGCAAGACCTCCGATGCTGACACTCCAACCCCACCGCTAGTACAAATGGCTCATTCAAATGGCTCACTCAAACGCCATGCACCGGCAGCTCAACCTCCACCACCGCCTTCACTCATGGTGGTTTGCTACAAAGAGTGCCTCAAAAACCATGCTGCTGGGATAGGTGGCTATGCCCTTGATGGTTGTGGTGAGTTCATGTCTTCACCTGCCTTTAATTCCAGCAACCCCACTTCACTAAAATGTGCTGCATGTGGCTGCCACCGCAATTTTCACCGCCGGGAAGCACAAGATTCCAATCCCAACTCTCTGAACCGTCCCCAATCTTCACCACCGAAGTCAGCCCCAGCTGTTCCACCTCCTCAGCCGCATGCACCACCAGAGGCTCCCCCGCAAAGGGGGTTTCCATGCCCAAGCTCAAGTACAAGCCCCAGTGGTAGCCCCAGATGCAGCATTCCAAGCCCAGAGTCGAGCCCCTCCCCTCCACCAATCTCTCAATTTTCAGCACCTACCTACCATGCATCTGCACCCCAGATTCTATTATCTCTCGGCAACTCTTATGACACTGCACCAGCTGAAGACCAACAGCGCAGGAGTTTGATCCACCACAAGGAGGTGAAGAGTGAGAACCCATGTGGGAGAAAGAGATCCAGGACAAAATTCAGCCGAGAGCAAAAGGAGAAGATGTTCATGTTCTGTGAGAAACTTGGTTGGAAAATGCAGAGGGTGGAGGAGAGAGTGGTGCAGGAGTTCTGCAATGAGGTTGATGTCAGCAGATATGTCTTCAAGGTTTGGATGCACAACAACAAGAACAAAAGATCAGACAAGCATATCTCCCGTGACAGAGCCTTTGGTGCAGTCAATGGTGGTAGAGATGGTCTTCACAGTTACAACTTTGATGGTAGCAGCAACAATAACATTCAACTTAAACAAGAAGAAAGCCATGGGAATGTTCATGTTCCTGCAAATGGGTCTTCTCCTTAA 1002 0.507 MDLAILGSKTSDADTPTPPLVQMAHSNGSLKRHAPAAQPPPPPSLMVVCYKECLKNHAAGIGGYALDGCGEFMSSPAFNSSNPTSLKCAACGCHRNFHRREAQDSNPNSLNRPQSSPPKSAPAVPPPQPHAPPEAPPQRGFPCPSSSTSPSGSPRCSIPSPESSPSPPPISQFSAPTYHASAPQILLSLGNSYDTAPAEDQQRRSLIHHKEVKSENPCGRKRSRTKFSREQKEKMFMFCEKLGWKMQRVEERVVQEFCNEVDVSRYVFKVWMHNNKNKRSDKHISRDRAFGAVNGGRDGLHSYNFDGSSNNNIQLKQEESHGNVHVPANGSSP* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g01128 333 NCBIfam homeobox domain, ZF-HD class 220 277 IPR006455 -
Pte12g01128 333 Gene3D - 207 282 - -
Pte12g01128 333 MobiDBLite consensus disorder prediction 141 159 - -
Pte12g01128 333 MobiDBLite consensus disorder prediction 118 140 - -
Pte12g01128 333 MobiDBLite consensus disorder prediction 10 24 - -
Pte12g01128 333 MobiDBLite consensus disorder prediction 1 41 - -
Pte12g01128 333 MobiDBLite consensus disorder prediction 195 227 - -
Pte12g01128 333 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 50 101 IPR006456 -
Pte12g01128 333 MobiDBLite consensus disorder prediction 201 227 - -
Pte12g01128 333 MobiDBLite consensus disorder prediction 101 176 - -
Pte12g01128 333 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 50 101 IPR006456 -
Pte12g01128 333 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 34 278 - -
Pte12g01128 333 SUPERFAMILY Homeodomain-like 214 278 IPR009057 -
Pte12g01128 333 MobiDBLite consensus disorder prediction 103 117 - -
Pte12g01128 333 Pfam ZF-HD protein dimerisation region 48 102 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g01128 Pte-Chr12 29878607 29879744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g01128 46 276 ZF-HD Transcription Factor Family AT1G69600 45.339 2.49e-52 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pte12g01128 ZF-HD_dimer 1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g01128 - - qsa:O6P43_033018 274.633