Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g01121 ATGGCTTCTGAATCTGAGGTTTCTGAATTATCAGCTCTGTTTGAAAGAATGACCAGGAACAGAGACCTCCCTCTGTTTCTGCCTTTCATTTTCGGCTTCACAAATTTCAGTTCTTTTAGTAGAGGTTCACCAAACCCAGATCAACATCAAGAGAATACTACCACACCTGCCGTTCTTACAGCCATGAACGCAACCACAGGAACAGAAGCAGCAGCAACAGCGACAACAGCCCGGCGTGATAGGCTCATTTTGATAAACCCTATTACTCAATCCATGCTTGTGATGGATGGGGCTTCAAATTGGGAGACACTGCTTGAAGAGATGGGTCGGAAGGGTGGTCAACCACCGGCTTCTAAGAAATCTCTAGAGTCTATGCCGTGTGTCGAGATTGGGGAAGGTGAAGAAGGGGAGTGTGTGATTTGTTTGGAAGAGTGGGAGACTGGTGGGGTGGTCAAAGAGATGCCTTGTAAACATAGATTCCATGGAAATTGCATAGAGAGTTGGTTGAGGATTCATGGGACTTGCCCTTTTTGCAGGTATAAGATGCCTGTTGATGACAGAGACATGGGGAAGAAGACTGATGACGAAAGAGGAGAAGAGAGAAGAGAAATTTGGTTGCATTTGTCGTTTGATGATGTTGCTGGGAGGAGAAATGTGGATTCTGATCAACCTCAAGTTCAAGCTCAAGCTGCTTCTGCCAATTCAAATGACTCTACATCAACAAGAAGAGATGATGATGAGATTGACTGTTAA 753 0.4489 MASESEVSELSALFERMTRNRDLPLFLPFIFGFTNFSSFSRGSPNPDQHQENTTTPAVLTAMNATTGTEAAATATTARRDRLILINPITQSMLVMDGASNWETLLEEMGRKGGQPPASKKSLESMPCVEIGEGEEGECVICLEEWETGGVVKEMPCKHRFHGNCIESWLRIHGTCPFCRYKMPVDDRDMGKKTDDERGEERREIWLHLSFDDVAGRRNVDSDQPQVQAQAASANSNDSTSTRRDDDEIDC* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g01121 250 SMART ring_2 138 178 IPR001841 -
Pte12g01121 250 SUPERFAMILY RING/U-box 125 185 - -
Pte12g01121 250 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 56 183 - -
Pte12g01121 250 ProSiteProfiles Zinc finger RING-type profile. 138 179 IPR001841 -
Pte12g01121 250 MobiDBLite consensus disorder prediction 216 250 - -
Pte12g01121 250 MobiDBLite consensus disorder prediction 220 238 - -
Pte12g01121 250 FunFam E3 ubiquitin-protein ligase RNF181 105 185 - -
Pte12g01121 250 Pfam Ring finger domain 137 179 IPR001841 -
Pte12g01121 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 185 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g01121 Pte-Chr12 29164958 29166063 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g01121 1 217 C3H Transcription Factor Family AT1G26800 46.396 3.49e-59 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g01121 - - tcc:18610387 219.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g01121 12 29164958 29166063 Pte12g01121 12 29164958 29166063 RCT