Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g01120 ATGGATATTCAAAATCAGGCCATGAATTTGGTACTGTCTGCTGATGCTAAGCCAAGGCTGAAATGGACCCCAGAGCTTCACCAGCGTTTTGTTGAAGCAGTAAACCAGCTTGGAGGGCCAGAAAAGGCAACACCAAAGAGTCTTATGAGGGTGATTGGAATTCCAGGACTTACTCTGTATCATTTGAAGAGCCATTTGCAGAAGTTCAGACTGGGAAAAAGTCAACACGCAGAAACTTGCTCGGACAATACGCAAGAAGACTGCAGAGATAGTCAAAGCAATGGTAGCAACTGCAGTAGAGAAATCAATGGTGTAATCAACAATCAAATGAATGAAAGCTTGCACATAGCTGAGGCTCTCCAGATGCAACTAGAAGTGCAGAGGAAATTCCACGAGCAAATTGAGGTACAGAAGCGGCTGCAGCTGCGCATTGAAGCTCAAGGGAAGTACTTGCAATCAGTGCTAAAGAAGGCTCAAGAAACATTGGCTCAGTACAATTCTTCCACAGTTGGCATAGAGACAGCAAAAATTGAATTATCCCGTTTAATCTCAATAATTAGCAATGCTTATCCAACTTCTCCAATCTCTGAAATTACAGAAACACGGGTTATGAACTTTAAAGAATTGAAAAGGAAAGATGCAGAAGGTACAATATGTTCATTAGAGAGCTCATTGACATCATCAGAGAGCTCTGGCAGAGATGACGAAAAGCATCCAATGATCCATGGTGGAGACCATCAAGTAACCTACAGGGCTTCAGTAGTAGAATTGCAACTAATGGCTATCCACTCACAAGAATTGGAAGTAAATGGTAACGAAAGTAGTGAAGGAAGAGGGAGGAAGAGAAATGGAGTAACCAGTTCTGCAGATGGTTCAACAGAGCAACCATTTGTAAAGAGTAGTGGCAACAAGTCAAGGAGATTAGAATTATCAAAAATGCTTGACTTGAACAGTCAATACCACAGTGATCTTGACTTGAACTGA 984 0.4177 MDIQNQAMNLVLSADAKPRLKWTPELHQRFVEAVNQLGGPEKATPKSLMRVIGIPGLTLYHLKSHLQKFRLGKSQHAETCSDNTQEDCRDSQSNGSNCSREINGVINNQMNESLHIAEALQMQLEVQRKFHEQIEVQKRLQLRIEAQGKYLQSVLKKAQETLAQYNSSTVGIETAKIELSRLISIISNAYPTSPISEITETRVMNFKELKRKDAEGTICSLESSLTSSESSGRDDEKHPMIHGGDHQVTYRASVVELQLMAIHSQELEVNGNESSEGRGRKRNGVTSSADGSTEQPFVKSSGNKSRRLELSKMLDLNSQYHSDLDLN* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g01120 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 74 IPR017930 -
Pte12g01120 327 MobiDBLite consensus disorder prediction 281 304 - -
Pte12g01120 327 Pfam MYB-CC type transfactor, LHEQLE motif 115 161 IPR025756 -
Pte12g01120 327 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 6 279 IPR044848 GO:0003700
Pte12g01120 327 NCBIfam myb-like DNA-binding domain, SHAQKYF class 17 72 IPR006447 GO:0003677
Pte12g01120 327 MobiDBLite consensus disorder prediction 220 243 - -
Pte12g01120 327 MobiDBLite consensus disorder prediction 266 306 - -
Pte12g01120 327 Pfam Myb-like DNA-binding domain 19 68 IPR001005 -
Pte12g01120 327 MobiDBLite consensus disorder prediction 229 243 - -
Pte12g01120 327 FunFam Myb family transcription factor 16 74 - -
Pte12g01120 327 SUPERFAMILY Homeodomain-like 16 72 IPR009057 -
Pte12g01120 327 Gene3D - 16 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g01120 Pte-Chr12 29160047 29162273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g01120 1 201 G2-like Transcription Factor Family AT1G69580 55.072 1.63e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pte12g01120 Myb_DNA-binding 1.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g01120 - - qsa:O6P43_025475 404.445