Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g01117 ATGGGAGAAAATGCTCATCGTTTAACAGTTTTGTCTCTTCAGGGTACAAAAATGGTTCTTGCTCAATTTGTCGTGATGGGTTTTCTGGCAACGTTCTCATCTGCTTATGCTTATGTTGAGGGCTGGATTGATGCTCACGCCACATTCTATGGAGGAAGCGATGCTTCTGGAACAATGGGTGGGGCTTGTGGGTATGGGAATCTTTATAGCCAAGGCTATGGAACCAATACTGCAGCTTTGAGCACAGCTCTGTTCAACAATGGACTGAACTGTGGGTCTTGCTACGAGATTAAGTGTGTAAATGACCAGCAATGGTGTCTTCCCAGCTCTATTGTGATCACAGCTACCAATTTCTGTCCCCCGAACAATGCCCTCCCCAACAATGATGGGGGTTGGTGTAACCCTCCCCTCTACCACTTTGACCTCTCTCAGCCTGTCTTTCAGCATATTGCACAATACAGAGCTGGAATTGTCCCAGTAGCTTACAGAAGGGTGCCCTGTGCAAGAAGGGGAGGCATGAGGTTCACCATCAATGGACATTCGTACTTCAACCTTGTGCTCATCACTAACGTAGGTGGTGCTGGTGATGTGCATGCTGTGGATGTCAAAGGGTCTAGAACTGGTTGGATGCCCATGTCAAGGAACTGGGGTCAAAATTGGCAGACAAATGACTATCTCAATGGTCAAGCACTGTCCTTCAAAGTCACCACCAGTGATGGCCGCGCTGTGGTCTCCTACAATGCTGCTCCGGCTAGCTGGTCCTTTGGGCAGACTTTTGCTGGGGCTCAGTTCCTCTAG 798 0.4875 MGENAHRLTVLSLQGTKMVLAQFVVMGFLATFSSAYAYVEGWIDAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLNCGSCYEIKCVNDQQWCLPSSIVITATNFCPPNNALPNNDGGWCNPPLYHFDLSQPVFQHIAQYRAGIVPVAYRRVPCARRGGMRFTINGHSYFNLVLITNVGGAGDVHAVDVKGSRTGWMPMSRNWGQNWQTNDYLNGQALSFKVTTSDGRAVVSYNAAPASWSFGQTFAGAQFL* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g01117 265 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 60 172 IPR007112 -
Pte12g01117 265 PANTHER EXPANSIN-A15 23 264 IPR002963 GO:0009664
Pte12g01117 265 CDD DPBB_EXPA_N 41 167 - -
Pte12g01117 265 SUPERFAMILY PHL pollen allergen 169 260 IPR036749 -
Pte12g01117 265 FunFam Expansin 31 168 - -
Pte12g01117 265 Gene3D - 172 264 IPR036749 -
Pte12g01117 265 SMART dpbb_1 77 162 IPR007112 -
Pte12g01117 265 Pfam Lytic transglycolase 77 162 IPR009009 -
Pte12g01117 265 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 182 261 IPR007117 -
Pte12g01117 265 SUPERFAMILY Barwin-like endoglucanases 41 190 IPR036908 -
Pte12g01117 265 Pfam Expansin C-terminal domain 173 250 IPR007117 -
Pte12g01117 265 Gene3D - 28 168 IPR036908 -
Pte12g01117 265 PRINTS Expansin signature 247 263 IPR002963 GO:0009664
Pte12g01117 265 PRINTS Expansin signature 147 160 IPR002963 GO:0009664
Pte12g01117 265 PRINTS Expansin signature 171 183 IPR002963 GO:0009664
Pte12g01117 265 PRINTS Expansin signature 72 86 IPR002963 GO:0009664
Pte12g01117 265 PRINTS Expansin signature 111 121 IPR002963 GO:0009664
Pte12g01117 265 PRINTS Expansin signature 183 204 IPR002963 GO:0009664
Pte12g01117 265 PRINTS Expansin signature 218 239 IPR002963 GO:0009664
Pte12g01117 265 PRINTS Expansin signature 130 147 IPR002963 GO:0009664
Pte12g01117 265 PRINTS Expansin signature 99 110 IPR002963 GO:0009664
Pte12g01117 265 FunFam Expansin 172 264 - -
Pte12g01117 265 PRINTS Expansin/Lol pI family signature 247 261 IPR007118 GO:0005576
Pte12g01117 265 PRINTS Expansin/Lol pI family signature 81 99 IPR007118 GO:0005576
Pte12g01117 265 PRINTS Expansin/Lol pI family signature 209 223 IPR007118 GO:0005576
Pte12g01117 265 PRINTS Expansin/Lol pI family signature 59 77 IPR007118 GO:0005576
Pte12g01117 265 PRINTS Expansin/Lol pI family signature 155 171 IPR007118 GO:0005576
Pte12g01117 265 PRINTS Expansin/Lol pI family signature 41 56 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g01117 Pte-Chr12 29105985 29108164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g01117 17 264 Expansin Gene Family AT2G03090 78.629 4.09e-148 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g01117 - - tcc:18610379 457.218