Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g01112 ATGGCAGAAGACCAACTTCAGCAGCTTAGATCCAAAGCCTCTGAGCTATTCCTTAGAGAGGAATGGAGCCAATCAGTGCACGCTTACGATGACTTCATCCAACTCTGTCGTCTCCAACTTCCTCAGAACGGTTTGCAGTCTGACTCAACCAACTTGCACAAGTTAAGAAGATCGCTGTGCTTAGCACTCTGTAACCGAGCTGAAGCAAGGTCGAGACTTGGGGAATACTCTGAAGCTTTGGAAGATTGTGAACAGGCACTGGAAATTGACGGGACGCACTTCAAGACTCTGCTCTGTAAAGGTAAGATTTTGCTAAATACGGATAGGTACTCCACTGCTATGGAGTGCTTCAGAACTTGTCTTTTTGATGCTCACGCTAATGGGAAATCTGAAATCAATGGGTACTTAGAGAAATGCAAAAAGCTGGAGTTTTTATCTCGCACTGGGGGTTTTGATTTATCAGATTGGGTTATGAATGATTTTAGAGGGAAAATTCCTGAGCTTGCAGAGTATATTGGTGCAGTGGAGATTAAGAAATCTGAAATTAGTGGACGTGGTCTATTTGCAACGAGAAACTTGGATTCAGGGACACTGGTTTTGGTTACCAAAGCTATAGCCACGGAACGGAGTATATTGCCAGGTAAGGATTTGAGTGAGGATGCCCAGTTAGTGATGTGGAAAAATTTCATTCATAAAGTTAGAGAAATCGCCACAAAATGCAAGAAAACACAATTTCTGATTAGTGTTTTGTCTTCTGGGGAAGATGAAGATATACTAGAGGTTCTAGATATAAGTTTCTTCAAGCCTGAGACGGAGGTCTACATGATGTGCATAGATGAGAAGATGGATGTGAATAAAGTGTTGACAGTTTTAGATGTGAATTCACTTGCTGAGCATGCGGCTTCATCAAAAGTACTGGGGAAGAATAATGATTGTTATGGTATTGGTTTGTGGTTGCAGGCTGCTTTCATCAACCATTCTTGTCGTCCCAATGCAAGGAGGTTGCATGTAGGGGACTATCTGATAGTCCACACCTCAAGAGATGTCAAAGCTGGAGAGGAGATCACATTTGCATATTTTGATCCATTTTCTCCAATTGAAAAGAGGAAAGAGATGGCAATGACATGGAGCATTGATTGTAGATGCAAGAGATGCATGTTTGAAGAGAACATGTGCAGTAAGCAAGAGATGAGAGAAATTGAGATTAGCTACGAGAAAGGGATGGATGCGGGAAGTGTGGTGTTCCGACTGGAAGAAGAGATGAAGAGAGTTATGGTGAGGGGAAGAGAGAAAGGGTACGTAAGAGCATCCTTTTGGTCTGCATATTCTGATGCTTATACATCAGATAGGATCATGAAGAAGTGGGGAAGGAGGATTCCAACGATGGAGTCTGTGGTTGATAGCATTGCGGACGTGGTAGGAAGTGATGAGAGGCTAGTGAAAATCTTAATGGAGAGCTTGAAGAAAAATGGTGGTGGATTGATGGAGATGGAGGAGAAGGTTTTGAAATTGGGAAGAGGCGCTTATGGGAAATTGGTGAAGAAGAAAGCAATCAGGACTCTCCTGGAGACCAGCGTCAGTAATCATGATTAA 1593 0.4269 MAEDQLQQLRSKASELFLREEWSQSVHAYDDFIQLCRLQLPQNGLQSDSTNLHKLRRSLCLALCNRAEARSRLGEYSEALEDCEQALEIDGTHFKTLLCKGKILLNTDRYSTAMECFRTCLFDAHANGKSEINGYLEKCKKLEFLSRTGGFDLSDWVMNDFRGKIPELAEYIGAVEIKKSEISGRGLFATRNLDSGTLVLVTKAIATERSILPGKDLSEDAQLVMWKNFIHKVREIATKCKKTQFLISVLSSGEDEDILEVLDISFFKPETEVYMMCIDEKMDVNKVLTVLDVNSLAEHAASSKVLGKNNDCYGIGLWLQAAFINHSCRPNARRLHVGDYLIVHTSRDVKAGEEITFAYFDPFSPIEKRKEMAMTWSIDCRCKRCMFEENMCSKQEMREIEISYEKGMDAGSVVFRLEEEMKRVMVRGREKGYVRASFWSAYSDAYTSDRIMKKWGRRIPTMESVVDSIADVVGSDERLVKILMESLKKNGGGLMEMEEKVLKLGRGAYGKLVKKKAIRTLLETSVSNHD* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g01112 530 ProSiteProfiles SET domain profile. 173 360 IPR001214 GO:0005515
Pte12g01112 530 SMART set_7 173 366 IPR001214 GO:0005515
Pte12g01112 530 Gene3D Tetratricopeptide repeat domain 3 144 IPR011990 GO:0005515
Pte12g01112 530 SMART tpr_5 60 93 IPR019734 GO:0005515
Pte12g01112 530 SMART tpr_5 94 127 IPR019734 GO:0005515
Pte12g01112 530 Gene3D SET domain 263 391 IPR046341 -
Pte12g01112 530 CDD SET_SMYD 289 385 - -
Pte12g01112 530 SUPERFAMILY TPR-like 7 121 IPR011990 GO:0005515
Pte12g01112 530 Coils Coil 66 86 - -
Pte12g01112 530 PANTHER TPR DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_5G12710) 3 522 - -
Pte12g01112 530 Pfam SET domain 184 359 IPR001214 GO:0005515
Pte12g01112 530 Pfam Tetratricopeptide repeat 62 92 IPR001440 GO:0005515
Pte12g01112 530 SUPERFAMILY SET domain 174 385 IPR046341 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pte12g01112 SET 2.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g01112 - - qsa:O6P43_025489 735.332