Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g01103 ATGACAAAGAGGAAAAGAGCACAAGAGGAGAGCAGCAGTTATGATGGCAACGTAGATTTGCAGCAACTGATGGAAGATGCAGCTGCAGCCTTAGGGAGAGCGACAAGAGCAAGAAAGAAATACATTGGGGTTCGCCAAAGGCCTTCAGGTAGATGGGTGGCTGAGATAAAGGATACCATACATAACATAAGAGTATGGCTGGGCACGTATGACACTGCTGAAGATGCTGCAAGAGCTTATGATGAAGCAGCTTGCATGCTTCGTGGAACCAATACCCGCACCAATATCTCACGTCGTGATTATCCGAATCCAAAGCCAGCCCTACCTTCGAAAATTTCGAATCTTCTACTCATGAGGCTTAAAGCCAGGATAGAAGCCTCTAACTCTGCTGCTGCTGCTGCTGCTGCTGCTTCTGTCAACACTAATCTTTGTCGTGAGCTAGTAATAGTAGAAGAATCCTCGTTTGATACTAGTAGTTATCTAAACCTGCATGCAGATGGTGTCATTCATGAGTGTAATGATGCAGCTAGTAGTAATAGTCCTGCTGCAGTTAATGTGAATGGTAGCACTGAATTAAGTTCTACTGATCACATGTGTTTAAGTACTGATCATCAAGGTGCGGACTATAATTGGTCCGGTACTATCGATGACGGCAATCAAGAGGGTTGCAGAAAATTGGAAGAGAAAGAAGAATTGGAAGAATGTGACATGGGAATCATAGACTTTGAGTTTCTTGATTCCATCGTGTCAAATTTTCAATTTTCACCGTTTGAGATAGTGCAGGAAATGGTAACAGCAGAGGAGGATAATTCTGGGGAGAAGCCATCAACAGTGGAAGAAAGTGTTAAGAGGATGAAGTATGAACGCAAATTCTCTGCTTCACTATATGCCTTCAATGGGGTTTCGGAGTGTCTAAGGCTTAAAAATTGCTCAGCCGACTCATCAAATGGACTAGAGAATTATGAAGTAGGACAAGTGATCACCACCAATGGTAGGGATAGCCATATGAATGCTGAAGCGGTTAAGAATGAAGAAGACGTCTATTTTGAGCAAATGCTTCAAGAACAAATTCAATGCATGTCGAATTTGGTAGAGTCCTCTTCATCAATGTCATCATCCTAG 1122 0.4269 MTKRKRAQEESSSYDGNVDLQQLMEDAAAALGRATRARKKYIGVRQRPSGRWVAEIKDTIHNIRVWLGTYDTAEDAARAYDEAACMLRGTNTRTNISRRDYPNPKPALPSKISNLLLMRLKARIEASNSAAAAAAAASVNTNLCRELVIVEESSFDTSSYLNLHADGVIHECNDAASSNSPAAVNVNGSTELSSTDHMCLSTDHQGADYNWSGTIDDGNQEGCRKLEEKEELEECDMGIIDFEFLDSIVSNFQFSPFEIVQEMVTAEEDNSGEKPSTVEESVKRMKYERKFSASLYAFNGVSECLRLKNCSADSSNGLENYEVGQVITTNGRDSHMNAEAVKNEEDVYFEQMLQEQIQCMSNLVESSSSMSSS* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g01103 373 SUPERFAMILY DNA-binding domain 40 97 IPR016177 GO:0003677
Pte12g01103 373 Gene3D AP2/ERF domain 39 98 IPR036955 GO:0003700|GO:0006355
Pte12g01103 373 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 18 292 - -
Pte12g01103 373 SMART rav1_2 40 103 IPR001471 GO:0003700|GO:0006355
Pte12g01103 373 Pfam AP2 domain 40 89 IPR001471 GO:0003700|GO:0006355
Pte12g01103 373 CDD AP2 39 95 IPR001471 GO:0003700|GO:0006355
Pte12g01103 373 PRINTS Ethylene responsive element binding protein signature 41 52 IPR001471 GO:0003700|GO:0006355
Pte12g01103 373 PRINTS Ethylene responsive element binding protein signature 63 79 IPR001471 GO:0003700|GO:0006355
Pte12g01103 373 ProSiteProfiles AP2/ERF domain profile. 40 97 IPR001471 GO:0003700|GO:0006355
Pte12g01103 373 FunFam ethylene-responsive transcription factor RAP2-11 39 98 - -
Pte12g01103 373 Coils Coil 20 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g01103 Pte-Chr12 28585126 28586247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g01103 38 116 AP2-EREBP Transcription Factor Family AT5G19790 65.823 3.04e-29 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte12g01103 AP2 2.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g01103 K09286 - jre:109003219 226.098